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JAL-1767 minimise local variable scope
2018-12-21 gmungocJAL-1767 minimise local variable scope
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2018-09-28 gmungocJAL-3063 service param files read/saved using JAXB...
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2018-09-28 gmungocJAL-3063 top level element added to JalviewWsParamSet.xsd
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2018-09-28 gmungocJAL-3063 comments re use of xjc to generate Java binding...
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2018-09-24 gmungocJAL-3063 tidy commented out code
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2018-09-21 gmungocJAL-3063 wrappers with check for null getting optional...
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2018-09-19 gmungocJAL-3063 use JAXB for 'Save as Project' and load project...
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2018-09-19 gmungocJAL-3063 unit test for save/load project switched to...
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2018-09-18 gmungocJAL-3063 Save/Load user defined colours using JAXB
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2018-09-18 gmungocJAL-3063 Save/Load user colour scheme using JAXB
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2018-09-18 gmungocJAL-3063 top level element added to colours schema...
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2018-09-18 gmungocJAL-3063 New View via JAXB
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2018-09-18 gmungocJAL-3063 temporary extra menu option to save/load project...
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2018-09-18 gmungocJAL-3063 first version of Jalview2XML using JAXB to...
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2018-09-18 gmungocJAL-3063 JAXB binding classes generated by xjc from...
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2018-09-18 gmungocJAL-3063 tweak schema so JAXB tool xjc recognises XML...
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2018-09-18 gmungocJAL-3063 tweak schema so JAXB generates enums for enumerated...
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2018-09-17 gmungocJAL-3116 test method renamed to match code
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2018-09-17 gmungocJAL-3116 unit tests adapted to EMBL over JAXB
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2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit...
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2018-09-13 gmungocJAL-3116 Uniprot XML unmarshalled using JAXB not Castor
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2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org...
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2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org...
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2018-09-12 gmungocJAL-1551 reinstated Save actions
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2018-09-03 gmungocMerge branch 'trialMerge' into releases/Release_2_10_5_Branch
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2018-09-03 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of...
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2018-08-31 gmungocJAL-3003 remove redundant call to drawSelectionGroup
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2018-08-15 gmungocJAL-3080 remove tree partition if no groups created
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2018-08-14 gmungocJAL-3078 reset Tree font (only!) on Cancel
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2018-08-10 gmungocJAL-3018 updated to Ensembl REST 7.0
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2018-08-10 gmungocJAL-3076 refactor for more efficient scan of 'gene...
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2018-08-10 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of...
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2018-06-07 gmungocJAL-2755 correct Javadoc and error handling
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2018-06-07 gmungocJAL-2920 format/comment tidy
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2018-06-07 gmungocJAL-2920 wrap description in <html/> if it includes...
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2018-06-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' of https...
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2018-06-06 gmungocJAL-2920 unit tests for 3 or more original or variant...
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2018-06-06 gmungocJAL-3013 ensure Chimera as a symlink gets resolved
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2018-06-04 gmungocJAL-2808 update test for revised treatment of 'mixed...
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2018-06-04 gmungocJAL-3019 correctly form toRange of 'traversed' MapList
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2018-06-04 gmungocJAL-3018 updated REST versions to 6.3
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2018-05-31 gmungocJAL-2808 don't capture or report min-max for mixed...
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2018-05-31 gmungocJAL-2808 pre-fill numeric inequality filter with min...
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2018-05-28 gmungocMerge branch 'bug/JAL-797' into develop
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2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2_10_4...
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2018-05-25 gmungocJAL-2992 simpler heuristic for available height
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2018-05-25 gmungocJAL-2995 tooltip on fields with double-click to browse...
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2018-05-25 gmungocJAL-2994 temporary patch with paths to Chimera for...
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2018-05-24 gmungocJAL-2997 additional tests
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2018-05-23 gmungocJAL-2993 AlignFrame listen for keystrokes in OverviewPanel
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2018-05-23 gmungocJAL-2997 unit test
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2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number...
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2018-05-21 gmungocJAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW
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2018-05-21 gmungocJAL-2920 use HGVS notation for protein variant feature
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2018-05-11 gmungocJAL-2986 corrected findIndex for out of range residue...
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2018-05-11 gmungocJAL-2986 additional asserts for SequenceCursor updates
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2018-05-11 gmungocJAL-2986 failing test added
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2018-05-09 gmungocJAL-2984 add pdb as sequence(s) if associate structure...
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2018-05-07 gmungocJAL-2808 ensure test setUp/tearDown alwaysRun
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2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
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2018-05-07 gmungocJAL-1767 unit test for save and restore PCA
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2018-05-07 gmungocJAL-1767 scheme DoubleMatrix type includes D and E...
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2018-05-07 gmungocJAL-2982 use configured background colour in PCA image...
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2018-05-07 gmungocJAL-1767 JAL-2647 hide 'Input Data..' for PCA loaded...
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2018-05-07 gmungocJAL-1767 save PCA D and E vectors instead of 'details...
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2018-05-04 gmungocJAL-2906 small tweaks to release notes
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2018-05-04 gmungocJAL-2975 Shift-arrow keys to rotate PCA incrementally
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2018-05-04 gmungocJAL-1767 schema and Castor changes for Save PCA in...
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2018-05-04 gmungocJAL-2965 graduate brightness on z-axis from centre...
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2018-05-04 gmungocJAL-1767 refactorings to enable faithful restore of...
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2018-05-02 gmungocJAL-1767 getters/setters for D and E vectors
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2018-05-01 gmungocJAL-1767 include d and e vectors in Matrix.copy()
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2018-04-30 gmungocJAL-2965 graduated sequence point colour from back...
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2018-04-27 gmungocJAL-2964 tree@linkToAllViews attribute added to project...
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2018-04-27 gmungocJAL-2963 correctly dim PCA points with negative z-coordinates
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2018-04-27 gmungocJAL-1767 refactoring and tidying of RotatableCanvas...
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2018-04-26 gmungocJAL-2962 start on help updates
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2018-04-26 gmungocJAL-2962 rename run method (as not a Runnable)
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2018-04-26 gmungocJAL-2962 remove Change Parameters menu from PCA panel
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2018-04-26 gmungocJAL-2962 option to offer BLOSUM62 for nucleotide PCA
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2018-04-26 gmungocJAL-2962 code tidying/documentation (non-functional...
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2018-04-25 gmungocJAL-1767 minor field tidying prior to functional changes
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2018-04-24 gmungocJAL-2959 no Print dialog shown if Page Format is Cancelled
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2018-04-23 gmungocJAL-2954 more efficient SearchResults.markColumns
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2018-04-23 gmungocJAL-2952 set negative TempFactor values as AlignmentAnnotati...
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2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
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2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency...
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2018-04-13 gmungocMerge branch 'features/JAL-2944_openStructuresInSelectedView...
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2018-04-12 gmungocJAL-2223 don't add duplicate mappings to StructureSelectionM...
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2018-04-12 gmungocJAL-1847 minor post-review updates
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2018-04-12 gmungocJAL-2944 tidies for review comments
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2018-03-22 gmungocJAL-2929 unit test, tidy unused/unneeded fields/parameters
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2018-03-21 gmungocJAL-2929 use configure Overview gap colour instead...
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2018-03-16 gmungocJAL-2679 getGeneId() now uses the same pattern as getGeneLoc...
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2018-03-16 gmungocMerge remote-tracking branch 'origin/releases/Release_2_10_4...
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2018-03-16 gmungocJAL-2922 update FeatureRenderer and repaint feature...
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2018-03-16 gmungocMerge branch 'bug/JAL-2865removeGC' into develop
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2018-03-15 gmungocJAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
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2018-03-14 gmungocJAL-2893 include ENSEMBLGENOMES as a 'roundtrip db...
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2018-03-14 gmungocJAL-2679 reinstating changes lost in VCF merge
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