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JAL-3980 defensive copy - inefficient but fixes bug
2022-03-25 Jim ProcterJAL-3980 defensive copy - inefficient but fixes bug
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2022-03-25 Jim ProcterJAL-3981 Additional line breaks - sort of helps
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2022-03-24 Jim ProcterJAL-3981 strategic newlines to help speed up Java's...
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2022-03-09 Jim ProcterJAL-3746 JAL-3841 fix README typo
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2022-03-09 Jim ProcterJAL-3746 more docs tweaking and release notes
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2022-03-09 Jim ProcterMerge branch 'spike/try_spotless_JAL-3438' into develop
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2022-03-08 Jim ProcterJAL-3746 apply copyright to tests
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2022-03-08 Jim ProcterJAL-3746 apply copyright to source
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2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
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2022-03-08 Jim ProcterJAL-3746 JAL-3841 new README and finalising 2.11.2...
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2022-03-08 Jim ProcterJAL-3108 updated Ensembl client and model species names
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2022-03-08 Jim ProcterJAL-3746 new release date for 2.11.2
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2022-03-08 Jim ProcterJAL-3746 JAL-3103 java.awt.Desktop.showURL method mechanism...
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2022-03-08 Jim ProcterMerge branch 'bug/JAL-3103_browser_launcher_problems_macos_a...
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2022-03-07 Jim ProcterJAL-3647 release notes for JAL-1842 JAL-3509 JAL-3881...
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2022-03-07 Jim ProcterJAL-3685 - two single quotes when replacements are...
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2022-03-04 Jim ProcterJAL-3647 release notes for hdpi/laf scaling JAL-3608...
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2022-03-04 Jim ProcterJAL-3746 structure mapping preference docs for JAL...
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2022-03-04 Jim ProcterJAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user...
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2022-03-04 Jim ProcterJAL-3746 JAL-3812 new argument ‘-nohtmltemplates’ and...
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2022-03-04 Jim ProcterJAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disables...
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2022-03-04 Jim ProcterJAL-3746 JAL-3814 don’t automatically launch the news...
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2022-03-04 Jim ProcterJAL-3746 JAL-3814 NONEWS property
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2022-03-04 Jim ProcterJAL-3608 JAL-3830 tweaked the what’s new text and updated...
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2022-03-04 Jim ProcterJAL-3608 JAL-3830 simplified command line docs a bit
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2022-03-04 Jim ProcterMerge branch 'doc/JAL-3608+JAL-3830_added_to_help_docs...
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2022-03-02 Jim ProcterMerge branch 'bug/JAL-3962_awt_dll_problem' into develop
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2022-03-02 Jim ProcterJAL-3746 release notes for JAL-3867
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2022-03-02 Jim ProcterJAL-3746 release note for JAL-3907 building Jalview...
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2022-03-02 Jim ProcterJAL-3746 release note for JAL-3618 Vaqua config so...
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2022-03-02 Jim ProcterMerge branch 'benreview/JAL-3691_for_2_11_2_getdownrebuilds...
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2022-03-02 Jim ProcterJAL-3594 release notes and mention jalview develop...
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2022-03-02 Jim ProcterRelease notes for JAL—3728 - waiting for ben to sign...
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2022-03-02 Jim ProcterJAL-3208 release notes and docs for setprop
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2022-03-02 Jim ProcterJAL-3746 release notes and cli arg docs for JAL-3530
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2022-03-02 Jim ProcterJAL-3746 release notes JAL-3391 JAL-3829 improved 3dbeacons...
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2022-03-02 Jim ProcterJAL-3746 release notes for JAL-3929
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2022-03-02 Jim ProcterJAL-3746 more what’s new
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2022-03-02 Jim ProcterJAL-3619 fix up error messages and try to bail quietly...
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2022-03-02 Jim ProcterJAL-3619 fix up warning message and minimal patch to...
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2022-03-02 Jim ProcterJAL-3746 what’s new..
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2022-03-02 Jim ProcterJAL-3746 release notes for JAL-3202 (JalviewJS)
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2022-03-02 Jim ProcterJAL-3746 update release date and release notes/docs...
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2022-02-28 Jim ProcterJAL-3746 more what’s new and release notes
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2022-02-28 Jim ProcterJAL-3503 2.11.2.0 release notes and docs
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2022-02-28 Jim ProcterJAL-3746 JAL-3551 update pymol docs and what’s new...
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2022-02-28 Jim ProcterJAL-3746 document -no-annotation cli arg
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2022-02-17 Jim ProcterMerge branch 'develop' into improvement/JAL-3830_install4j9_...
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2022-02-17 Jim ProcterJAL-3551 patch superpose test for additional undo dis...
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2022-02-17 Jim ProcterJAL-3823 JAL-3830 update gradle plugin for install4j...
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2022-02-17 Jim ProcterMerge branch 'develop' into improvement/JAL-3830_install4j9_...
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2022-02-17 Jim ProcterJAL-3959 add key retrieval urls that support CORS needed...
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2022-02-17 Jim ProcterJAL-3746 more release notes and docs: JAL-3863 JAL...
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2022-02-17 Jim ProcterJAL-3691 rebuilt getdown jars
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2022-02-17 Jim ProcterJAL-3691 patch toUpper/toLower to use Locale.ROOT for...
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2022-02-17 Jim ProcterJAL-3691 patch toUpper/toLower to use Locale.ROOT for...
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2022-02-16 Jim ProcterJAL-3746 release notes.. in progress
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2022-02-16 Jim ProcterJAL-3551 - wrap pair_fit with undo_disable and undo_enable
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2022-02-16 Jim ProcterJAL-3837 GPL license on splashscreen (finally !) and...
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2022-02-16 Jim ProcterJAL-3949 report Pymol XMLRPC port via log.info
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2022-02-15 Jim ProcterJAL-1761 backbone type parameter for configuring which...
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2022-02-15 Jim ProcterJAL-1761 need to pass molecule type when generating...
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2022-02-15 Jim ProcterJAL-3551 patch test for altloc handling atom spec in...
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2022-02-15 Jim ProcterJAL-1761 need to pass molecule type when generating...
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2022-02-15 Jim ProcterJAL-3906 use indicate to highlight current mousedOver...
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2022-02-15 Jim ProcterJAL-3746 update release date to later in Feb 2022
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2022-02-15 Jim ProcterJAL-3551 pymol documentation
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2022-02-14 Jim ProcterMerge branch 'task/r_2_11_2/JAL-3956_alphaFill_authoritative...
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2022-02-14 Jim ProcterJAL-3551
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2022-02-14 Jim ProcterJAL-3956 - PDBEntry objects constructed from 3D-Beacons...
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2022-02-12 Jim ProcterMerge branch 'update/JAL-3949_jalview_bin_Console_to_cure_sa...
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2022-02-11 Jim ProcterJAL-3949 increase command line ops test timeout
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2022-02-11 Jim ProcterJAL-3949 ensure Jalview command line ops setup actually...
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2022-02-11 Jim ProcterMerge branch 'update/JAL-3949_jalview_bin_Console_to_cure_sa...
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2022-02-11 Jim ProcterJAL-3931 fix - escape % symbols after urlencoding
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2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
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2022-02-10 Jim ProcterMerge branch 'bug/JAL-3523_cwd_not_preserved' into...
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2022-02-07 Jim ProcterJAL-3186 remove ‘Variable Colour’ from the sequence...
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2022-02-04 Jim ProcterMerge branch 'bug/JAL-3806_mappingCoversSequence_for2112...
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2022-02-04 Jim ProcterJAL-3806 JAL-3725 update tests since CDS mappings now...
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2022-02-04 Jim ProcterJAL-3806 require mapping extent covers both sequence...
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2022-02-03 Jim ProcterJAL-3806 use the covers() test for each selected sequence...
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2022-02-03 Jim ProcterJAL-3806 use same logic as for mouse over highlighting...
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2022-02-03 Jim ProcterJAL-3806 todo - problem seems to be Protein:Many CDS...
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2022-02-03 Jim ProcterJAL-2305 comments re testFindXrefSequences_withFetch...
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2022-01-28 Jim ProcterJAL-3137 tests are for linux only
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2022-01-28 Jim ProcterMerge branch 'merge/develop_JAL-3725' into develop
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2022-01-27 Jim ProcterMerge branch 'bug/JAL-3633_read_proxy_settings_from_jalview_...
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2022-01-26 Jim ProcterJAL-3763 (for whatever reason) need to increase timeout...
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2022-01-26 Jim ProcterJAL-3746 note about adding JAL-3700,JAL-3751,JAL-3763...
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2022-01-26 Jim ProcterMerge branch 'merge/develop_task/JAL-3763_newDatasetForCds...
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2022-01-26 Jim ProcterJAL-3763 (for whatever reason) need to increase timeout...
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2022-01-26 Jim ProcterMerge branch 'task/JAL-3763_newDatasetForCds' into...
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2022-01-26 gmungocJAL-3806 (2.11.2 version) more lax allowance (3 positions...
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2022-01-26 Jim ProcterJAL-3806 JAL-3725 propagate relaxed criteria for stop...
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2022-01-26 gmungocJAL-3725 restrict mapped virtual feature location to...
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2022-01-26 gmungocJAL-3725 helper methods for computing mapped feature...
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2022-01-26 gmungocJAL-3725 exclude stop codon from CDS-to-protein mapping
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2022-01-18 Jim ProcterJAL-3940 update 2.11.2 release notes for 2.11.1.7 patch...
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2022-01-17 Jim ProcterJAL-3940 update 2.11.2 release notes for 2.11.1.7 patch...
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