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JAL-1486 JAL-535 refactor code for trimming alignment annotation according to selecti...
2014-09-12 j.procter@dundee... JAL-1486 JAL-535 refactor code for trimming alignment...
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2014-09-12 j.procter@dundee... JAL-535 tidy interface definition and documentation
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2014-09-12 j.procter@dundee... JAL-1516 Annotation row score output script for jalview...
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