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2021-04-26	Ben Soares	JAL-3248 Moved old README to doc/old_README and put...	commit \| commitdiff \| tree
2021-04-26	Ben Soares	JAL-3743 JAL-3745 Fixed NullPointerExceptions happening...	commit \| commitdiff \| tree
2021-04-22	Ben Soares	JAL-3833 Allow setHiDPI and setHiDPIScale to work more...	commit \| commitdiff \| tree
2021-04-18	Ben Soares	JAL-3833 cap the scaling used by HiDPISetting for incorrect...	commit \| commitdiff \| tree
2021-03-04	Ben Soares	JAL-3594 Allow a channel to use a different preferences...	commit \| commitdiff \| tree
2021-02-10	Ben Soares	JAL-3251 On linux set (sun.awt.X11.XToolkit.)awtAppClassName...	commit \| commitdiff \| tree
2021-02-10	Ben Soares	JAL-3521 Changed wording of INSTALLATION in source...	commit \| commitdiff \| tree
2021-02-08	Ben Soares	JAL-3521 Adding a build_properties into sourceDist...	commit \| commitdiff \| tree
2021-01-26	Ben Soares	JAL-3521 Updating file opening marker to %u	commit \| commitdiff \| tree
2021-01-26	Ben Soares	JAL-3521 Debian mime-type and desktop helper files...	commit \| commitdiff \| tree
2021-01-22	Ben Soares	JAL-3805 Remove Uninstall Old Jalview.app in Release_2_11_1_...	commit \| commitdiff \| tree
2021-01-11	Ben Soares	JAL-3789 Use j2s.config.altfileproperty in .j2s for...	commit \| commitdiff \| tree
2021-01-11	Ben Soares	JAL-3789 New swingjs for Java2Script 3.2.10 with j2s...	commit \| commitdiff \| tree
2020-12-14	Ben Soares	JAL-3280 Fixed the version checking URL formulation...	commit \| commitdiff \| tree
2020-12-14	Ben Soares	JAL-3783 Reverting to using groovy-all-2.4.12-indy...	commit \| commitdiff \| tree
2020-12-14	Ben Soares	JAL-3628 Test for doubly saved single backup file scheme	commit \| commitdiff \| tree
2020-12-14	Ben Soares	JAL-3594 Allow setting of getdownappbase and getdowndistdir...	commit \| commitdiff \| tree
2020-12-14	Ben Soares	JAL-3280 Test for remote release build_properties file...	commit \| commitdiff \| tree
2020-12-14	Ben Soares	JAL-3280 fixes after CR-JAL-241. Now only checking...	commit \| commitdiff \| tree
2020-12-14	Ben Soares	JAL-3280 Pass appbase and appdir from getdown to jalvew...	commit \| commitdiff \| tree
2020-12-11	Ben Soares	JAL-3594 Defintely want SplashScreen to appear in the...	commit \| commitdiff \| tree
2020-12-11	Ben Soares	JAL-3594 Changed building.md to describe -PCHANNEL...	commit \| commitdiff \| tree
2020-12-11	Ben Soares	JAL-3594 Changed building.md to reflect change of name...	commit \| commitdiff \| tree
2020-12-11	Ben Soares	JAL-3594 Adjustments to allow JalviewJS to use ChannelProper...	commit \| commitdiff \| tree
2020-12-11	Ben Soares	JAL-3775 JAL-3633 Make java.net.Authenticator code...	commit \| commitdiff \| tree
2020-12-10	Ben Soares	Merge branch 'task/JAL-3594_updated--CHANNEL_cosmetics...	commit \| commitdiff \| tree
2020-12-10	Ben Soares	JAL-3594 Better Jalview Develop banner	commit \| commitdiff \| tree
2020-12-10	Ben Soares	JAL-3594 Documentation added to building.md for using...	commit \| commitdiff \| tree
2020-12-10	Ben Soares	Merge branch 'task/JAL-3594_updated--CHANNEL_cosmetics...	commit \| commitdiff \| tree
2020-12-10	Ben Soares	Merge branch 'merge/develop_and_rebase_squashed_merge_JAL...	commit \| commitdiff \| tree
2020-12-09	Ben Soares	JAL-3594 Improved About banners for develop and test...	commit \| commitdiff \| tree
2020-12-09	Ben Soares	JAL-3594 Images for splash screen	commit \| commitdiff \| tree
2020-12-09	Ben Soares	JAL-3594 JAL-3728 Added taskbar icons to desktop and...	commit \| commitdiff \| tree
2020-12-08	Ben Soares	Merge branch 'merge/develop_and_rebase_squashed_merge_JAL...	commit \| commitdiff \| tree
2020-12-08	Ben Soares	JAL-3594 Change main window title	commit \| commitdiff \| tree
2020-12-07	Ben Soares	JAL-3594 added BG logo. Changed some named Jalviews...	commit \| commitdiff \| tree
2020-12-07	Ben Soares	JAL-3754 Fixed jar task creating strange dir because...	commit \| commitdiff \| tree
2020-12-07	Ben Soares	JAL-3754 Fixed jar task creating strange dir because...	commit \| commitdiff \| tree
2020-12-05	Ben Soares	JAL-3594 Default values for channel properties defined...	commit \| commitdiff \| tree
2020-12-04	Ben Soares	JAL-3594 Added rotating logo png	commit \| commitdiff \| tree
2020-12-04	Ben Soares	JAL-3754 fixed a problem with jar task creating a stray...	commit \| commitdiff \| tree
2020-12-04	Ben Soares	JAL-3775 added the Platform.isLinux() check for test...	commit \| commitdiff \| tree
2020-12-04	Ben Soares	JAL-3594 New jalview.util.ChannelProperties to get...	commit \| commitdiff \| tree
2020-12-04	Ben Soares	JAL-3594 Generating GIMP XCF files for getdown and...	commit \| commitdiff \| tree
2020-12-04	Ben Soares	JAL-3594 Release images and channel properties	commit \| commitdiff \| tree
2020-12-03	Ben Soares	JAL-3594 New way for build.gradle to override properties...	commit \| commitdiff \| tree
2020-12-02	Ben Soares	JAL-3594 new logos, icons and cosmetics for getdown...	commit \| commitdiff \| tree
2020-12-01	Ben Soares	JAL-3594 Different icon/getdown styling when launching...	commit \| commitdiff \| tree
2020-12-01	Ben Soares	Merge branch 'develop' into merge/develop_and_rebase_squashe...	commit \| commitdiff \| tree
2020-12-01	Ben Soares	JAL-3609 JAL-3775 Updated getdown with re-factored...	commit \| commitdiff \| tree
2020-12-01	Ben Soares	JAL-3609 JAL-3775 Tests for jalview.bin.HiDPISetting	commit \| commitdiff \| tree
2020-12-01	Ben Soares	JAL-3609 JAL-3775 Refactoring a bit of jalview.bin...	commit \| commitdiff \| tree
2020-12-01	Ben Soares	JAL-3775 Adding Mockito jars for tests. Needed for...	commit \| commitdiff \| tree
2020-12-01	Ben Soares	JAL-3660 Fix for specified output format when using...	commit \| commitdiff \| tree
2020-12-01	Ben Soares	JAL-3530 Added a -nowebservicediscovery command line...	commit \| commitdiff \| tree
2020-11-27	Ben Soares	JAL-3660 Fix for specified output format when using...	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3757 JAL-3689 Fixed checks for URLs by adding checks...	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3775 Re-compiled Getdown jars	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3775 Eclipse re-formatting commit	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3633 last minute refinement so password box doesn...	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3633 Apply (proxy) button enabled when needed	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3633 Help documentation updated	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3633 Small changes to allow future fitting with...	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3275 JAL-3633: JAL-3275 Turned Preferences into...	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3633 Set proxy preferences before web calls in...	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3633 Memory only proxy auth password storage. Open...	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3633 Added Proxy Authentication credentials in...	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3633 Added Preferences for Proxy Authentication...	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3633 label.proxy_server -> label.proxy_servers	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3633 Remember system set proxy properties. Add...	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3633 pass getdown proxy settings in proxy.txt on...	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3633 ensure check both http:// or https:// for...	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3628 Error when saving alert box has been moved...	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3676 More explicit tooltip about resetting log...	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3676 Removed BACKUPFILESPRESETENTRY logging for...	commit \| commitdiff \| tree
2020-11-10	Ben Soares	JAL-3628 Fixed oddly worded and non-formatted error...	commit \| commitdiff \| tree
2020-11-10	Ben Soares	JAL-3676 improvement for visual selection of console...	commit \| commitdiff \| tree
2020-11-10	Ben Soares	JAL-3676 code review -- added non-listed Level into...	commit \| commitdiff \| tree
2020-11-10	Ben Soares	JAL-3676 Added Log Level ComboBox and Copy to Clipboard...	commit \| commitdiff \| tree
2020-11-10	Ben Soares	JAL-3628 Fix for slightly incorrect boolean usage to...	commit \| commitdiff \| tree
2020-11-10	Ben Soares	JAL-3628 Even more Cache.log.debug statements	commit \| commitdiff \| tree
2020-11-10	Ben Soares	JAL-3628 More Cache.log.debug statements	commit \| commitdiff \| tree
2020-11-06	Ben Soares	JAL-3628 Changed all file1.renameTo(file2) calls to...	commit \| commitdiff \| tree
2020-11-06	Ben Soares	JAL-3609 formatting save after cherry-picks	commit \| commitdiff \| tree
2020-11-06	Ben Soares	JAL-3609 Allow pass-through of setHiDPIScale property...	commit \| commitdiff \| tree
2020-11-06	Ben Soares	JAL-3609 Report when scale setting used.	commit \| commitdiff \| tree
2020-11-06	Ben Soares	JAL-3609 New auto-scale 'formula' for linux HiDPI....	commit \| commitdiff \| tree
2020-11-05	Ben Soares	JAL-3608 cherry pick of 92cb745e7	commit \| commitdiff \| tree
2020-10-29	Ben Soares	JAL-3248 Added mention of version 'TEST' in shadow...	commit \| commitdiff \| tree
2020-10-29	Ben Soares	JAL-3248 Fixed path typos in building.md/html and corrected...	commit \| commitdiff \| tree
2020-10-28	Ben Soares	JAL-3248 Added step to create the eclipse files before...	commit \| commitdiff \| tree
2020-10-15	Ben Soares	Merge branch 'develop' into blocker/JAL-3611_space_character...	commit \| commitdiff \| tree
2020-09-28	Ben Soares	JAL-3753 ensure correct dependencies for shadowJar...	commit \| commitdiff \| tree
2020-09-28	Ben Soares	Merge branch 'develop' into bug/JAL-3753_resources_duplicate...	commit \| commitdiff \| tree
2020-09-25	Ben Soares	JAL-3577 Removed default JALVIEW_VERSION from gradle...	commit \| commitdiff \| tree
2020-09-24	Ben Soares	JAL-3577 Quick fix adding quotation marks for findProperty...	commit \| commitdiff \| tree
2020-09-23	Ben Soares	Merge branch 'develop' into bug/JAL-3753_resources_duplicate...	commit \| commitdiff \| tree
2020-09-23	Ben Soares	JAL-3477 Added 10k leeway to amount of memory reserved...	commit \| commitdiff \| tree
2020-09-23	Ben Soares	JAL-3753 Resources seen in tests and appropriate filters...	commit \| commitdiff \| tree
2020-09-20	Ben Soares	JAL-3753 put resources in gradle run and test path	commit \| commitdiff \| tree
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