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2007-03-22	amwaterhouse	Jalview colours added to Jmol	commit \| commitdiff \| tree
2007-03-22	amwaterhouse	Saves Jmol status	commit \| commitdiff \| tree
2007-02-27	amwaterhouse	Uncomment graphics 2d bit	commit \| commitdiff \| tree
2007-02-27	amwaterhouse	Launch applet jmol	commit \| commitdiff \| tree
2007-02-27	amwaterhouse	Use paintAlignment	commit \| commitdiff \| tree
2007-02-27	amwaterhouse	check conservation length	commit \| commitdiff \| tree
2007-02-27	amwaterhouse	Structure listener	commit \| commitdiff \| tree
2007-02-27	amwaterhouse	remove p+3 < query.length	commit \| commitdiff \| tree
2007-02-27	amwaterhouse	No longer use ref to seqcanvas for painting	commit \| commitdiff \| tree
2007-02-27	amwaterhouse	blank space for chain name if empty	commit \| commitdiff \| tree
2007-02-27	amwaterhouse	keep record of atomIndeX	commit \| commitdiff \| tree
2007-02-27	amwaterhouse	jmol added	commit \| commitdiff \| tree
2007-02-27	amwaterhouse	jmol	commit \| commitdiff \| tree
2007-02-12	amwaterhouse	version 3.7	commit \| commitdiff \| tree
2007-02-12	amwaterhouse	date added	commit \| commitdiff \| tree
2007-02-12	amwaterhouse	>0 rather than -1 check	commit \| commitdiff \| tree
2007-02-12	amwaterhouse	Reload jar files	commit \| commitdiff \| tree
2007-02-12	amwaterhouse	Hashtable for previously loaded pdb files	commit \| commitdiff \| tree
2007-02-12	amwaterhouse	Make checkbox bigger for text on mac	commit \| commitdiff \| tree
2007-02-07	amwaterhouse	formatted	commit \| commitdiff \| tree
2007-02-07	amwaterhouse	restore unformatted state	commit \| commitdiff \| tree
2007-02-07	amwaterhouse	Formatting	commit \| commitdiff \| tree
2007-02-07	amwaterhouse	formatting	commit \| commitdiff \| tree
2007-02-07	amwaterhouse	Extend annotation if too short	commit \| commitdiff \| tree
2007-02-07	amwaterhouse	reload, just close this frame and open a new one	commit \| commitdiff \| tree
2007-02-07	amwaterhouse	2.2.1 changes	commit \| commitdiff \| tree
2007-02-07	amwaterhouse	removed	commit \| commitdiff \| tree
2007-02-06	amwaterhouse	2.2.1 updates	commit \| commitdiff \| tree
2007-02-06	amwaterhouse	Dont add null description to tooltip	commit \| commitdiff \| tree
2007-02-06	amwaterhouse	Applet params cant read tab character	commit \| commitdiff \| tree
2007-02-06	amwaterhouse	Allow for frame insets	commit \| commitdiff \| tree
2007-02-06	amwaterhouse	Format label	commit \| commitdiff \| tree
2007-02-05	amwaterhouse	Alignment editing columns 0 and 1 fixed	commit \| commitdiff \| tree
2007-02-05	amwaterhouse	Fixed bug in trim right annotation adjust	commit \| commitdiff \| tree
2007-02-05	amwaterhouse	stop flickering annotationPanel	commit \| commitdiff \| tree
2007-02-05	amwaterhouse	Fixed bug in trim right annotation adjust	commit \| commitdiff \| tree
2007-02-05	amwaterhouse	image is panel size	commit \| commitdiff \| tree
2007-02-05	amwaterhouse	applet can define groups as parameters	commit \| commitdiff \| tree
2007-02-02	amwaterhouse	Dont add group if seqs not found	commit \| commitdiff \| tree
2007-02-02	amwaterhouse	getWidth -1 for trim right	commit \| commitdiff \| tree
2007-02-02	amwaterhouse	check annotation size when cutting	commit \| commitdiff \| tree
2007-02-02	amwaterhouse	annotation might have been deleted	commit \| commitdiff \| tree
2007-02-02	amwaterhouse	catch control down before editing null pointer	commit \| commitdiff \| tree
2007-02-02	amwaterhouse	22 = scrollbar and insets widthcvs diff gui/AlignmentPanel...	commit \| commitdiff \| tree
2007-02-02	amwaterhouse	Must allow for scollbar and frame insets when getting...	commit \| commitdiff \| tree
2007-02-02	amwaterhouse	LookandFeel must be set in headless state as window...	commit \| commitdiff \| tree
2007-02-01	amwaterhouse	removed deprecated bits	commit \| commitdiff \| tree
2007-02-01	amwaterhouse	find colours uncommented	commit \| commitdiff \| tree
2007-02-01	amwaterhouse	sequence.getStart() in findTrueIndex	commit \| commitdiff \| tree
2007-02-01	amwaterhouse	get fontmetrics from pg	commit \| commitdiff \| tree
2007-02-01	amwaterhouse	Dont add null tooltip	commit \| commitdiff \| tree
2007-02-01	amwaterhouse	New description	commit \| commitdiff \| tree
2007-02-01	amwaterhouse	tooltips	commit \| commitdiff \| tree
2007-02-01	amwaterhouse	set description for groups	commit \| commitdiff \| tree
2007-02-01	amwaterhouse	Doesnt move with mouse, friendlier for mac users	commit \| commitdiff \| tree
2007-02-01	amwaterhouse	Dont repaint tooltip	commit \| commitdiff \| tree
2007-02-01	amwaterhouse	One class for edit name/description	commit \| commitdiff \| tree
2007-01-31	amwaterhouse	slightly larger window edit name/desc	commit \| commitdiff \| tree
2007-01-31	amwaterhouse	edit annotation name/description	commit \| commitdiff \| tree
2007-01-31	amwaterhouse	Can edit annotation name/description	commit \| commitdiff \| tree
2007-01-31	amwaterhouse	Consensus, conservation, quality labels may have changed	commit \| commitdiff \| tree
2007-01-31	amwaterhouse	aligned not used	commit \| commitdiff \| tree
2007-01-31	amwaterhouse	Dont export annotations if not visible	commit \| commitdiff \| tree
2007-01-31	amwaterhouse	Unique name for new group and treegroup	commit \| commitdiff \| tree
2007-01-31	amwaterhouse	Adjust features when cutting and pasting	commit \| commitdiff \| tree
2007-01-31	amwaterhouse	make new dataset seq if residues deleted	commit \| commitdiff \| tree
2007-01-31	amwaterhouse	copy feature: check for null values	commit \| commitdiff \| tree
2007-01-31	amwaterhouse	aligned not used	commit \| commitdiff \| tree
2007-01-30	amwaterhouse	Check valid residues in ss	commit \| commitdiff \| tree
2007-01-30	amwaterhouse	Check seqs in group exist in this alignment	commit \| commitdiff \| tree
2007-01-30	amwaterhouse	Any character non aa or nucleotide is a space	commit \| commitdiff \| tree
2007-01-30	amwaterhouse	moved painting routine	commit \| commitdiff \| tree
2007-01-30	amwaterhouse	consensusColouring never used	commit \| commitdiff \| tree
2007-01-30	amwaterhouse	Draw helices correctly	commit \| commitdiff \| tree
2007-01-30	amwaterhouse	Use util toHexString	commit \| commitdiff \| tree
2007-01-30	amwaterhouse	Output groups in annotation file	commit \| commitdiff \| tree
2007-01-29	amwaterhouse	Dont clear graphics g before drawing the image	commit \| commitdiff \| tree
2007-01-29	amwaterhouse	Image for labels, stops flickering	commit \| commitdiff \| tree
2007-01-29	amwaterhouse	New view copies annotations across	commit \| commitdiff \| tree
2007-01-29	amwaterhouse	Tooltips for group names, descriptions	commit \| commitdiff \| tree
2007-01-29	amwaterhouse	Description added	commit \| commitdiff \| tree
2007-01-29	amwaterhouse	SequenceGroup parsing added to annotation file	commit \| commitdiff \| tree
2007-01-29	amwaterhouse	ID_ITALICS option in preferences	commit \| commitdiff \| tree
2007-01-29	amwaterhouse	scaleAbove, left and right set when tab selection changes	commit \| commitdiff \| tree
2007-01-29	amwaterhouse	Marios annotation bug fixed	commit \| commitdiff \| tree
2007-01-26	amwaterhouse	AnnotationId is hashcode of object	commit \| commitdiff \| tree
2007-01-26	amwaterhouse	Only set the sequence oncecvs diff datamodel/Alignment...	commit \| commitdiff \| tree
2007-01-26	amwaterhouse	Adjusts annotations for sequence edits	commit \| commitdiff \| tree
2007-01-26	amwaterhouse	If its null, set tip empty	commit \| commitdiff \| tree
2007-01-25	amwaterhouse	Command takes alignment, not gapChar	commit \| commitdiff \| tree
2007-01-25	amwaterhouse	Annotations move when full alignment edited	commit \| commitdiff \| tree
2007-01-25	amwaterhouse	Annotation adjustment moved to EditCommand	commit \| commitdiff \| tree
2007-01-25	amwaterhouse	Remove unneccessary lines	commit \| commitdiff \| tree
2007-01-25	amwaterhouse	AlignmentAnnotations require id	commit \| commitdiff \| tree
2007-01-25	amwaterhouse	Allow for hidden columns	commit \| commitdiff \| tree
2007-01-25	amwaterhouse	Only output visible annotations	commit \| commitdiff \| tree
2007-01-25	amwaterhouse	load/get Annotation	commit \| commitdiff \| tree
2007-01-25	amwaterhouse	Remove unnecessary line	commit \| commitdiff \| tree
2007-01-25	amwaterhouse	Output annotations	commit \| commitdiff \| tree
2007-01-25	amwaterhouse	1.1 enabled	commit \| commitdiff \| tree
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