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2017-08-30	kiramt	JAL-2527 Code comments, tidy	commit \| commitdiff \| tree
2017-08-30	kiramt	JAL-2527 Added default setting/resetting and first...	commit \| commitdiff \| tree
2017-08-30	kiramt	JAL-2527 Wired up cached values to overview	commit \| commitdiff \| tree
2017-08-30	kiramt	Merge remote-tracking branch 'origin/feature/2588'...	commit \| commitdiff \| tree
2017-08-30	kiramt	Merge branch 'feature/JAL-2664' into feature/JAL-2527	commit \| commitdiff \| tree
2017-08-29	kiramt	JAL-2664 Updates following review	commit \| commitdiff \| tree
2017-08-29	kiramt	JAL-2527 Added overview prefs - don't get picked up...	commit \| commitdiff \| tree
2017-08-28	kiramt	JAL-2527 Started adding overview preferences	commit \| commitdiff \| tree
2017-08-18	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-08-18	kiramt	JAL-2664 Adjusted colour of hidden cols/seqs	commit \| commitdiff \| tree
2017-08-18	kiramt	JAL-2664 Correct colouring for rows	commit \| commitdiff \| tree
2017-08-14	kiramt	JAL-2664 Initial change to drawing hidden regions in...	commit \| commitdiff \| tree
2017-07-31	kiramt	JAL-2634 Make overview box full height when alignment...	commit \| commitdiff \| tree
2017-07-31	kiramt	JAL-2634 Added null test for graphics in AnnotationPanel...	commit \| commitdiff \| tree
2017-07-28	kiramt	JAL-2632 Added paintAlignment(true) to show cols code	commit \| commitdiff \| tree
2017-07-22	kiramt	Merge branch 'develop' into feature/JAL-2611	commit \| commitdiff \| tree
2017-07-18	kiramt	JAL-2611 unit tests	commit \| commitdiff \| tree
2017-07-18	kiramt	JAL-2611 Tidies, initial unit tests	commit \| commitdiff \| tree
2017-07-18	kiramt	JAL-2611 Better	commit \| commitdiff \| tree
2017-07-17	kiramt	JAL-2611 Still not happy with behaviour	commit \| commitdiff \| tree
2017-07-14	kiramt	JAL-2611 First pass, not thrilled with hidden column...	commit \| commitdiff \| tree
2017-07-14	kiramt	Merge branch 'feature/JAL-2613' into feature/JAL-2611	commit \| commitdiff \| tree
2017-07-14	kiramt	JAL-2611 Pre-merge checkin	commit \| commitdiff \| tree
2017-07-14	kiramt	JAL-2611 More unit tests	commit \| commitdiff \| tree
2017-07-14	kiramt	JAL-2613 Missed unit test	commit \| commitdiff \| tree
2017-07-13	kiramt	JAL-2611 Added overview dimensions test for position...	commit \| commitdiff \| tree
2017-07-13	kiramt	JAL-2613 Unit tests and a fix. Phew.	commit \| commitdiff \| tree
2017-07-12	kiramt	JAL-2613 Centre alignment at click point	commit \| commitdiff \| tree
2017-07-12	kiramt	JAL-2588 Check/fix show boxes settings + unit test...	commit \| commitdiff \| tree
2017-07-12	kiramt	JAl-2588 test updates	commit \| commitdiff \| tree
2017-07-12	kiramt	JAL-2588 Added tests	commit \| commitdiff \| tree
2017-07-11	kiramt	JAL-2588 (and JAL-2610, JAL-2603) mid refactor	commit \| commitdiff \| tree
2017-06-29	kiramt	JAL-2597 Fix and unit test	commit \| commitdiff \| tree
2017-06-28	kiramt	JAL-2600 Tidies	commit \| commitdiff \| tree
2017-06-28	kiramt	JAL-2600 updates following review	commit \| commitdiff \| tree
2017-06-28	kiramt	JAL-2603 Putative fix	commit \| commitdiff \| tree
2017-06-28	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-06-28	kiramt	JAL-2588 Gap colour scheme now shown in overview	commit \| commitdiff \| tree
2017-06-27	kiramt	JAL-2600 Tidies	commit \| commitdiff \| tree
2017-06-27	kiramt	JAL-2600 Abandoned fastpaint for resize; now full repaint...	commit \| commitdiff \| tree
2017-06-27	kiramt	JAL-2600 Add in IdCanvas and checks for 0 size images	commit \| commitdiff \| tree
2017-06-27	kiramt	JAL-2600 vertical fast paint too	commit \| commitdiff \| tree
2017-06-27	kiramt	JAL-2600 fast painting on resize	commit \| commitdiff \| tree
2017-06-26	kiramt	JAL-2600 reinstate original behaviour	commit \| commitdiff \| tree
2017-06-15	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-06-12	kiramt	JAL-2591 Updates following code review	commit \| commitdiff \| tree
2017-06-08	kiramt	JAL-2588 Consistent gap colour when in None colour...	commit \| commitdiff \| tree
2017-06-08	kiramt	Merge branch 'bug/JAL-2589gapColour' into feature/2588	commit \| commitdiff \| tree
2017-06-08	kiramt	Merge branch 'bug/JAL-2586' into develop	commit \| commitdiff \| tree
2017-06-08	kiramt	JAL-2586 Clarification to URL link code	commit \| commitdiff \| tree
2017-06-08	kiramt	JAL-2591 Made redraw flag in OverviewRenderer volatile	commit \| commitdiff \| tree
2017-06-08	kiramt	JAL-2591 made redraw volatile	commit \| commitdiff \| tree
2017-06-08	kiramt	JAL-2591 Refactor HiddenColumns to use ArrayList instead...	commit \| commitdiff \| tree
2017-06-08	kiramt	JAL-2591 More HiddenColumns refactoring. Tests passing.	commit \| commitdiff \| tree
2017-06-07	kiramt	JAL-2591 Further refactoring (still incomplete)	commit \| commitdiff \| tree
2017-06-07	kiramt	JAL-2591 More refactoring (incomplete)	commit \| commitdiff \| tree
2017-06-07	kiramt	JAL-2591 Hidden columns regions can be output to string...	commit \| commitdiff \| tree
2017-06-07	kiramt	JAL-2591 updated HiddenColumns::findHiddenRegionPositions...	commit \| commitdiff \| tree
2017-06-07	kiramt	JAL-2591 ported to applet	commit \| commitdiff \| tree
2017-06-07	kiramt	JAL-2591 Overview changes ported to applet	commit \| commitdiff \| tree
2017-06-07	kiramt	JAL-2591 More rationalising of hiddencols	commit \| commitdiff \| tree
2017-06-07	kiramt	JAL-2591 Overview window update interrupts	commit \| commitdiff \| tree
2017-06-07	kiramt	JAL-2591 Increased granularity of overview panel update...	commit \| commitdiff \| tree
2017-06-07	kiramt	JAL-2591 simplifying hidden columns usage	commit \| commitdiff \| tree
2017-06-06	kiramt	JAL-2591 Removed getHiddenRegions()==null checks which...	commit \| commitdiff \| tree
2017-06-06	kiramt	JAL-2591 Added readwrite locking on HiddenColumns	commit \| commitdiff \| tree
2017-06-06	kiramt	Merge remote-tracking branch 'origin/bug/JAL-2576'...	commit \| commitdiff \| tree
2017-06-05	kiramt	JAL-2588 Naive implementation of gaps as grey in overview	commit \| commitdiff \| tree
2017-06-05	kiramt	JAL-2586 Checkstyle flagged fix of unintended fall...	commit \| commitdiff \| tree
2017-06-05	kiramt	JAL-2571 Missed (alwaysRun=true) for @BeforeMethod	commit \| commitdiff \| tree
2017-06-02	kiramt	JAL-2576 Proposed fix	commit \| commitdiff \| tree
2017-06-02	kiramt	JAL-2577 Don't allow viewport ranges below 0. Unit...	commit \| commitdiff \| tree
2017-06-02	kiramt	JAL-2578 Moved hidden columns reveal to before selection...	commit \| commitdiff \| tree
2017-05-30	kiramt	JAL-2573 Fixes for alignment < viewport width, and...	commit \| commitdiff \| tree
2017-05-30	kiramt	JAL-2571 Corrected alignment width/height checks to...	commit \| commitdiff \| tree
2017-05-26	kiramt	JAL-2491 Missed port to applet from JAL-1691	commit \| commitdiff \| tree
2017-05-25	kiramt	JAl-2034 Ported to applet	commit \| commitdiff \| tree
2017-05-25	kiramt	JAL-2034 don't update overview after click without...	commit \| commitdiff \| tree
2017-05-25	kiramt	Merge branch 'bug/JAL-2551' into bug/JAL-2034contextchange	commit \| commitdiff \| tree
2017-05-24	kiramt	JAL-2551 Fix to group colouring when group extent is...	commit \| commitdiff \| tree
2017-05-24	kiramt	JAL-2034 Added isDefined flag to SequenceGroup	commit \| commitdiff \| tree
2017-05-22	kiramt	Merge remote-tracking branch 'origin/bug/JAL-2256'...	commit \| commitdiff \| tree
2017-05-18	kiramt	JAL-2256 Corrected AllCols/Rows iterator behaviour...	commit \| commitdiff \| tree
2017-05-16	kiramt	JAL-2536 Overview window sizing not subject to min...	commit \| commitdiff \| tree
2017-05-16	kiramt	JAL-2522 Missed fix to applet	commit \| commitdiff \| tree
2017-05-16	kiramt	JAL-2388 Rationalised hashCode method in HiddenColumns	commit \| commitdiff \| tree
2017-05-16	kiramt	Merge branch 'develop' into bug/JAL-2491	commit \| commitdiff \| tree
2017-05-16	kiramt	JAL-2491 Better merge	commit \| commitdiff \| tree
2017-05-15	kiramt	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2017-05-15	kiramt	JAL-2388 Add missed optimisation	commit \| commitdiff \| tree
2017-05-15	kiramt	JAL-2491 Better merge but not quite right yet	commit \| commitdiff \| tree
2017-05-15	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-05-15	kiramt	JAL-2491 Tests	commit \| commitdiff \| tree
2017-05-15	kiramt	JAL-2491 Tidies	commit \| commitdiff \| tree
2017-05-12	kiramt	JAL-2491 Tidy	commit \| commitdiff \| tree
2017-05-12	kiramt	JAL-2491 Tidies to Overview panel calls in light of...	commit \| commitdiff \| tree
2017-05-12	kiramt	JAL-2491 Renamed comp scrolling flag for consistency...	commit \| commitdiff \| tree
2017-05-12	kiramt	JAL-2491 Added adjustment methods to be called directly	commit \| commitdiff \| tree
2017-05-12	kiramt	JAL-2491 Unit test updates	commit \| commitdiff \| tree
2017-05-12	kiramt	JAL-2491 Tweaks for applet	commit \| commitdiff \| tree
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