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2021-09-15	Jim Procter	JAL-3746 fix bad merge from 2.11.1.4/5 branch cherrypick	commit \| commitdiff \| tree
2021-09-15	Jim Procter	JAL-3842 fix automatic what's new link for custom version...	commit \| commitdiff \| tree
2021-09-15	Jim Procter	JAL-3842 2.11.1.5 what’s new, release notes, and version...	commit \| commitdiff \| tree
2021-09-15	Jim Procter	JAL-3816 bump version number and cut release notes	commit \| commitdiff \| tree
2021-09-15	Jim Procter	JAL-3766 cut new patch release	commit \| commitdiff \| tree
2021-09-15	Jim Procter	JAL-3758 2.11.1.2 patch release notes and version bump	commit \| commitdiff \| tree
2021-09-15	Jim Procter	JAL-3741 http to https (and jar to jvp for exampleFile...	commit \| commitdiff \| tree
2021-09-15	Jim Procter	JAL-3477 added help documentation for executable jar...	commit \| commitdiff \| tree
2021-09-15	Jim Procter	JAL-3675 version update and documentation for JAL-3493...	commit \| commitdiff \| tree
2021-09-15	Jim Procter	JAL-3638 JAL-3680 fix docs for Alt + Arrow LRUD in...	commit \| commitdiff \| tree
2021-09-15	Jim Procter	Merge branch 'features/r2_11_2/JAL-3829_3dbeacons'...	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3829 parallel not welcome here	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3829 test flakiness and human flakiness	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3829 more info on test fail - seems to be flaky	commit \| commitdiff \| tree
2021-09-14	Jim Procter	Merge branch 'features/r2_11_2/JAL-3829_3dbeacons'...	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3551 - doc tweak	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3855 JAL-3829 better checks on PDB or mmCIF file...	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3829 JAL-3855 moved routing for retrieving structures...	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3829 JAL-3855 ignore case when detecting alphafold ID	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3855 detect an alphafold model and import its temperatur...	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3829 move mock query and responses to files	commit \| commitdiff \| tree
2021-09-14	Jim Procter	Merge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons	commit \| commitdiff \| tree
2021-09-14	Jim Procter	Merge branch 'feature/JAL-2422ChimeraX' into develop	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3829 3d-beacons doesn’t work as a sequence source...	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3829 avoid sending rubbish to PDBe search api	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3829 some providers don’t provide model quality...	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3829 allow multiple URL mocks and include P01308...	commit \| commitdiff \| tree
2021-09-13	Jim Procter	Merge branch 'releases/Release_2_11_2_Branch' into...	commit \| commitdiff \| tree
2021-09-13	Jim Procter	Merge branch 'features/r2_11_2/JAL-3829_3dbeacons'...	commit \| commitdiff \| tree
2021-09-13	Jim Procter	Merge branch 'features/r2_11_2/JAL-3829_3dbeacons'...	commit \| commitdiff \| tree
2021-09-13	Jim Procter	JAL-3829 ensure unmock the FTS PDB and TDB clients...	commit \| commitdiff \| tree
2021-09-13	Jim Procter	JAL-3829 minimal test of additional TDB filters - not...	commit \| commitdiff \| tree
2021-09-13	Jim Procter	JAL-3829 select single best TDB structure and select...	commit \| commitdiff \| tree
2021-09-12	Jim Procter	JAL-3829 JalviewJS workarounds/patches	commit \| commitdiff \| tree
2021-09-12	Jim Procter	JAL-3829 upgrade Jmol to 14.31.53, SwingJS-JSMol to...	commit \| commitdiff \| tree
2021-09-11	Jim Procter	JAL-3829 ensure tests use mocked service - proper exception...	commit \| commitdiff \| tree
2021-09-11	Jim Procter	JAL-3829 patch failing tests and todo for future	commit \| commitdiff \| tree
2021-09-10	Jim Procter	JAL-3829 provide both PDBe queries and 3D-Beacons queries...	commit \| commitdiff \| tree
2021-09-10	Jim Procter	JAL-3829 insert title for structures from PDBe	commit \| commitdiff \| tree
2021-09-10	Jim Procter	JAL-3829 update for v1.0 3d-beacons api spec	commit \| commitdiff \| tree
2021-09-10	Jim Procter	JAL-3829 point at production 3d-beacons url	commit \| commitdiff \| tree
2021-09-08	Jim Procter	JAL-3829 refactor and JAL-3391 JAL-2935 first stab...	commit \| commitdiff \| tree
2021-09-08	Jim Procter	JAL-3829 allow client-side selection of structures...	commit \| commitdiff \| tree
2021-09-08	Jim Procter	JAL-3829 JAL-3868 TODO	commit \| commitdiff \| tree
2021-09-08	Jim Procter	JAL-3829 formatting	commit \| commitdiff \| tree
2021-09-08	Jim Procter	JAL-3829 integration test verifying mock response is...	commit \| commitdiff \| tree
2021-09-06	Jim Procter	JAL-3829 work in progress - look up additional metadata...	commit \| commitdiff \| tree
2021-09-06	Jim Procter	JAL-3829 look up column in FTS data	commit \| commitdiff \| tree
2021-09-06	Jim Procter	JAL-3829 mocking for PDBFTS for related query to UniprotFTS...	commit \| commitdiff \| tree
2021-09-06	Jim Procter	JAL-3829 pull out structure chooser query source tests...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 JAL-3865 test structure chooser queries to...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 use sequence dependent constructor for structure...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 mocking for testing 3D-Beacons FTS endpoint	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3863 promote non-canonical version of dbref to...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 comments on the 3D structure chooser’s initialisati...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3865 isolate PDB and TDB clients and last query...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3863 passing test to verify a uniprot accession...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 JAL-3865 StructureChooserQuerySource implementation...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3855 don’t need to query Alphafold2 repository...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 refactored FilterOption provider to the StructureCh...	commit \| commitdiff \| tree
2021-09-02	Jim Procter	Merge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons	commit \| commitdiff \| tree
2021-09-02	Jim Procter	Merge branch 'cherry-pick/r2_11_2_JAL-3509' into develop	commit \| commitdiff \| tree
2021-09-02	gmungoc	JAL-1842 unit test updated for EnsemblGene feature...	commit \| commitdiff \| tree
2021-09-02	gmungoc	JAL-1842 adjust code to match changed semantics of...	commit \| commitdiff \| tree
2021-09-02	gmungoc	JAL-3509 JAL-1842 minor tidying of code	commit \| commitdiff \| tree
2021-09-02	gmungoc	JAL-1842 remove redundant call to FeatureRenderer.featuresAd...	commit \| commitdiff \| tree
2021-09-02	gmungoc	JAL-3509 better placement of call to notifyFeaturesChanged()	commit \| commitdiff \| tree
2021-09-02	gmungoc	JAL-3509 coerce RESNUM to hidden (really) after fetching...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3863 fix test and note about fragility	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3863 add canonical DBRefEntry flag to Jalview project	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 generalised Alphafold retrieval mechanism...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3863 mark first accession retrieved from Uniprot...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 Structure chooser specific FTS interface and...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	Merge branch 'feature/JAL-3855_ebi_alphafold_import...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 3d-beacons structure chooser logic (not yet...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 pulled out more of the FTS dependent parts...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 updated tests for 3db fetcher’s working FTS...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 proof in principle 3d-beacons sequence fetcher...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 3d-beacons has a custom alignment retrieval...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3674 Jmol seems to sometimes return a null for...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 fixed up the 3d-beacons data columns definitions...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 JAL-2176 - TODO re unused argument in FTSRestClientI	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 tidying up PDBFTSRestClient test responses...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 Javadoc for FTSColumnPreferences	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 pushed the PDBFTSClient specific code to new...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 removed unneeded attribute in FTS core	commit \| commitdiff \| tree
2021-08-30	arngucci	JAL-3829_spike minor changes	commit \| commitdiff \| tree
2021-08-30	arngucci	JAL-3832 Gui working, with 3DBeacons parameters	commit \| commitdiff \| tree
2021-08-30	arngucci	Merge branch 'arnaud/develop' into arnaud/JAL-3929_spike...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 forgot to add in the dummy 3d-beacons db proxy	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3674 Jmol seems to sometimes return a null for...	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3855 suppress NPE when trying to retrieve SIFTS...	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3855 ALPHAFOLD database source based on the PDB...	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3855 check if an alpha fold ID and retrieve using...	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3855 check for existence of an alpha fold model...	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3855 convenience method to check a URL will return...	commit \| commitdiff \| tree
2021-06-09	Jim Procter	JAL-3840 don’t update the modal residue count for gaps	commit \| commitdiff \| tree
2021-06-09	Jim Procter	fixes JAL-3840	commit \| commitdiff \| tree
2021-06-09	Jim Procter	JAL-3840 failing test - show that addGaps overflows	commit \| commitdiff \| tree
2021-04-06	Jim Procter	JAL-3832 dummy 3d-beacons database client and code...	commit \| commitdiff \| tree
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