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Merge branch 'cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat' into Jalview...
2020-06-17 Jim ProcterMerge branch 'cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_out...
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2020-06-17 Jim ProcterJAL-3660 JAL-3561 output alignment as requested file...
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2020-06-17 Jim ProcterJAL-3561 JAL-3660 check resolved FileFormatI instances...
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2020-06-17 Jim ProcterJAL-3561 failing test verifying expected fileformat...
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2020-05-25 Jim ProcterJAL-3626 rescue automatic configuration of JALVIEW_VERSION...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files
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2020-04-21 Jim ProcterJAL-3407 release notes - JAL-247 - for auto-set-ID...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterJAL-3407 fix JAL-3574 - remove from known issues for...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterJAL-3574 JAL-3407 release notes
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2020-04-21 Jim ProcterMerge branch 'bug/JAL-3574filterByPOS' into documentation...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterJAL-3407 add and document ComputePeptideVariants.groovy
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2020-04-21 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2020-04-21 Jim ProcterJAL-3567 JAL-3407 document sequence features report...
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2020-04-21 Jim ProcterMerge branch 'bug/JAL-3567virtualFeatureCoordinates...
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2020-04-21 Jim ProcterJAL-367 code tidy
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2020-04-21 Jim ProcterJAL-3567 translated rather than imputed peptide
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2020-04-14 Jim ProcterJAL-3407 JAL-3529 release notes
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2020-04-14 Jim ProcterMerge branch 'bug/JAL-3529_uniprotidsinstockholm' into...
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2020-04-14 Jim ProcterJAL-3529 revert ordering of DBRef addition so it reflects...
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2020-04-14 Jim ProcterJAL-3597 improved Memory test suite by detecting base...
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2020-04-14 Jim ProcterJAL-3407 release date set to 16th April, known issue...
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2020-04-14 Jim ProcterMerge branch 'testing/JAL-3577_jalviewversion_autoset_fixed...
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2020-04-09 Jim ProcterJAL-3577 automatically configure JALVIEW_VERSION for...
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2020-04-06 Jim ProcterJAL-3407 redact java 8 incompatible type inference
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2020-04-06 Jim ProcterJAL-3407 updated release date to Thursday 9th April...
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2020-03-31 Jim ProcterMerge branch 'documentation/Release_2_11_1_Branch'...
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2020-03-31 Jim ProcterJAL-3407 basic doc for releasing jalview - will be...
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2020-03-31 Jim ProcterJAL-3407 updated release date to 2nd April, and first...
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2020-03-31 Jim ProcterMerge branch 'documentation/Release_2_11_1_Branch'...
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2020-03-30 Jim ProcterJAL-3407 2.11.1.0 release date bump - maybe tomorrow...
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2020-03-30 Jim ProcterJAL-3407 JAL-3130 back out java 9+ syntax that breaks...
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2020-03-20 Jim ProcterJAL-3562 exclude testNG groups from a build via -PtestngExcl...
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2020-03-20 Jim ProcterJAL-3407 JAL-3562 release notes
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2020-03-20 Jim ProcterJAL-3407 rejigging new features - simplify release...
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2020-03-20 Jim ProcterJAL-3407 reformat releases.html
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2020-03-20 Jim ProcterJAL-3407 JAL-3549 javadoc
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2020-03-20 Jim ProcterJAL-3407 - release notes for JAL-3547
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2020-03-20 Jim ProcterJAL-3549 javadoc
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2020-03-16 Jim ProcterJAL-3407 JAL-3187 help documentation for virtual features...
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2020-03-16 Jim ProcterJAL-3407 JAL-3549 explicitly mention the ‘no features...
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2020-03-16 Jim ProcterJAL-3407 group together ‘virtual feature’ related features...
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2020-03-16 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2020-03-05 Jim ProcterMerge branch 'improvement/JAL-3543_dont_report_null_versions...
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2020-03-03 Jim ProcterMerge branch 'groovy/JAL-3547_conservationsequenceexport...
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2020-03-03 Jim ProcterJAL-3547 groovy script to get the conservation sequence...
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2020-03-02 Jim ProcterJAL-3407 redact Java 8 incompatible '<>' with anonymous...
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2020-02-27 Jim ProcterMerge branch 'bug/JAL-3412idWidthDiscrepancy' into...
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2020-02-27 Jim ProcterJAL-3407 release notes for JAL-3412
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2020-02-27 Jim ProcterJAL-3412 patch for failing test
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2020-02-27 Jim ProcterMerge branch 'bug/JAL-3412idWidthDiscrepancy' into...
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2020-02-27 Jim ProcterJAL-3407 JAL-3296 release notes
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2020-02-27 Jim ProcterMerge branch 'bug/JAL-3296changeStartInvalidateCursor...
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2020-02-26 Jim ProcterJAL-3477 jalview.jvmmemmax / jvmmemmax maximum value...
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2020-02-26 Jim ProcterMerge branch 'bug/JAL-3477_memory_max_allocation' into...
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2020-02-26 Jim ProcterJAL-3407 release notes for JAL-3449 JAL-3393 JAL-3420...
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2020-02-26 Jim ProcterMerge branch 'improvement/JAL-3449_add_install4j_installer_g...
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2020-02-26 Jim ProcterJAL-3541 docs for enabling OpenClover coverage reports...
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2020-02-26 Jim ProcterJAL-3541 removed clover report generation debug flag...
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2020-02-26 Jim ProcterJAL-3541 configurables for clover report generation...
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2020-02-25 Jim ProcterJAL-3541 track own jalview.gui.Desktop clover source...
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2020-02-25 Jim ProcterJAL-3541 2g heap for clover xml and clover html - remove...
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2020-02-25 Jim ProcterJAL-3541 add verbose and heap setting for HTML Report...
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2020-02-25 Jim ProcterJAL-3541 use javaExec to run clover tasks
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2020-02-21 Jim ProcterMerge branch 'bug/JAL-3536getCrossrefTwice' into develop
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2020-02-21 Jim ProcterJAL-3186 ensure transparency slider position is updated...
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2020-02-21 Jim ProcterJAL-3186 avoid repainting twice in splitframe
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2020-02-21 Jim ProcterMerge branch 'features/JAL-3187_uitweaks' into develop
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2020-02-21 Jim ProcterMerge branch 'develop' into features/JAL-3187_uitweaks
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2020-02-20 Jim ProcterJAL-3187 nice to have enabling/disabling of apply/cancel...
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2020-02-20 Jim ProcterJAL-3187 i18n
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2020-02-20 Jim ProcterJAL-3187 use the recommended way of catching tab selection...
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2020-02-20 Jim ProcterJAL-3187 individual feature settings panel has revert...
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2020-02-19 Jim ProcterJAL-3187 i18n for titles in windows/tabs
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2020-02-19 Jim ProcterJAL-3535 todo re titles for CDS and Protein views in...
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2020-02-19 Jim ProcterJAL-3187 - tabbed pane is nulled when feature settings...
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2020-02-19 Jim ProcterJAL-3187 JAL-2764 close feature settings when parent...
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2020-02-19 Jim ProcterMerge branch 'patch/JAL-3538_fontantialiasingbydefault...
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2020-02-19 Jim ProcterJAL-3538 JAL-3407 release notes
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2020-02-19 Jim ProcterJAL-3407 release next week :D
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2020-02-19 Jim ProcterJAL-3538 anti-aliasing enabled by default
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2020-02-18 Jim ProcterJAL-3529 attempt to guess database for a sequence’s...
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2020-02-18 Jim ProcterJAL-3529 test for AC <Uniprot/EMBL> rather than DR...
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2020-02-18 Jim ProcterJAL-3529 assert Uniprot refs must be provided as primary...
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2020-02-18 Jim ProcterJAl-3187 JAL-3535 JAL-3534 update open feature settings...
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2020-02-17 Jim ProcterJAL-3536 failing test and test data
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2020-02-17 Jim ProcterJAL-3534 patch for simple case (Protein or Nucleotide...
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2020-02-17 Jim ProcterJAL-3187 fix for JAL-3533 on CDS/Protein tabbed feature...
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2020-02-17 Jim ProcterJAL-3187 JAL-3533 JAL-3535 set feature settings dialog...
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2020-02-17 Jim ProcterJAL-3187 better semantics for feature settings closed...
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2020-02-14 Jim ProcterJAL-3532 TODO comment
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2020-02-14 Jim Procterfix for JAL-3529
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2020-02-14 Jim ProcterJAL-3531 failing test
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2020-02-14 Jim ProcterJAL-3529 more detailed asserts to detect whitespace...
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2020-02-14 Jim ProcterJAL-3529 preferentially output source dbrefs or principle...
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2020-02-14 Jim ProcterJAL-3529 failing test for bug
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2020-02-14 Jim ProcterJAL-3187 alternative solution - gather feature settings...
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