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JAL-2351 first refactoring and outline of read/write Jmol properties
2016-12-06 gmungocJAL-2351 first refactoring and outline of read/write...
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2016-12-05 gmungocJAL-1753 JAL-1596 JAL-1933 ensure AWT updates are on...
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2016-12-05 gmungocMerge branch 'features/JAL-1933_occupancy' into features...
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2016-12-02 gmungocMerge branch 'features/JAL-1933_occupancy' into features...
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2016-12-02 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-12-02 gmungocJAL-1933 gap value as description; minor formatting
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2016-11-30 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-30 gmungocJAL-2344 use ".cif" for saved mmCIF file (and refactor...
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2016-11-30 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-29 gmungocJAL-2329 tests to confirm behaviour of Java extended...
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2016-11-29 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-29 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-11-29 gmungocJAL-2344 corrected conversion of Type enum to FileFormat
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2016-11-29 gmungocJAL-2344 FileFormat.isStructureFile replaces
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2016-11-28 gmungocMerge branch 'develop' into trialMerge
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2016-11-28 gmungocJAL-2344 added FileFormatI.isStructureFile()
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2016-11-28 gmungocJAL-2345 cache generated ImageIcon per file path
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2016-11-25 gmungocJAL-2344 dynamically determine recognised extensions...
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2016-11-25 gmungocMerge branch 'develop' into trialMerge
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2016-11-25 gmungocJAL-2344 override to ignore (obsolete?) JalviewFileView
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2016-11-25 gmungocJAL-2344 use .equals() to compare FileFormatI objects
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2016-11-25 gmungocJAL-2344 correct roundtrip test to exclude Jalview...
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2016-11-24 gmungocDistinguish text-only output formats and others (.jar...
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2016-11-24 gmungocFurther tweaks to get tests passing
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2016-11-24 gmungocFileFormatI further tweaks, clean compile
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2016-11-23 gmungocJAL-1738 Spanish versions added
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2016-11-23 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-22 gmungocJAL-2337 fix: only adjust once for scroll offset
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2016-11-22 gmungocJAL-1919 JAL-2177 handle empty pdbentries list correctly
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2016-11-22 gmungocJAL-2277 refactored AlignmentPanel.printUnwrapped to...
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2016-11-21 gmungocJAL-2333 test beefed up with gaps
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2016-11-21 gmungocJAL-2333 corrected select columns with 'contact' feature
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2016-11-21 gmungocMerge branch 'develop' into bug/JAL-2323disulfideOverview
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2016-11-18 gmungocJAL-98 with the two types missing from last commit...
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2016-11-17 gmungocJAL-2323 revert to thread-safe iteration over array...
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2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns
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2016-11-17 gmungocJAL-98 javadoc, third party acknowledgements (and very...
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2016-11-17 gmungocJAL-2327 disulfide bond abstracted to SequenceFeature...
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2016-11-17 gmungocJAL-2327 add isContactFeature
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2016-11-16 gmungocJAL-2296 unit test for reading Chimera attributes to...
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2016-11-16 gmungocJAL-2323 render disulfide bond correctly on overview...
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2016-11-16 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-16 gmungocJAL-2324 fix and tests for comparison of Float.NaN...
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2016-11-16 gmungocJAL-2319 corrected reporting of SIFTS mapping
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2016-11-16 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-16 gmungocJAL-2296 don't copy attribute with value False
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2016-11-16 gmungocJAL-2295 don't exclude RESNUM from transfer to Chimera
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2016-11-14 gmungocJAL-2296 new code and refactoring for 'copy Chimera...
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2016-11-14 gmungocJAL-2295 don't copy 'Chimera' features back to Chimera
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2016-11-14 gmungocJAL-2296 parse Chimera atomspec to AtomSpec
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2016-11-14 gmungocJAL-2296 report whether SequenceFeature actually added...
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2016-11-14 gmungocJAL-2295 JAL-2296 skeleton 'attributes to features...
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2016-11-11 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-11 gmungocJAL-2295 tests now 'network-free' with local PDB and...
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2016-11-11 gmungocJAL-2295 JAL-2269 JAL-2319 mockable SIFTS file, fix...
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2016-11-11 gmungocJAL-2295 improved integrity of 'isFinishedInit' flag
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2016-11-11 gmungocJAL-1270 corrected command-line args
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2016-11-11 gmungocJAL-2295 set finishedInit to false before checking...
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2016-11-11 gmungocJAL-2295 test that verifies transfer of features to...
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2016-11-11 gmungocJAL-2295 sorted properties for readability
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2016-11-11 gmungocJAL-2295 (optionally) return Chimera command reply
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2016-11-11 gmungocJAL-2295 correct test for Float.isNaN(score) !
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2016-11-10 gmungocJAL-2295 additional tests, stronger sanitisation of...
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2016-11-10 gmungocJAL-2320 thread to close Chimera viewer panel if Chimera...
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2016-11-10 gmungocJAL-2320 added getViewer() method to return Chimera...
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2016-11-09 gmungocJAL-2295 set attributes commands include feature value...
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2016-11-09 gmungocJAL-2295 single constant for "RESNUM" feature name
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2016-11-08 gmungocJAL-2295 JAL-1596 method to pass a command script file...
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2016-11-08 gmungocJAL-2301 corrected search example to match AA properties...
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2016-11-08 gmungocJAL-2301 made T hydrophobic as per the cited conservation...
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2016-11-08 gmungocJAL-1961 added link to GFF3 format as well as GFF2
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2016-11-08 gmungocJAL-2295 feature and colour commands refactored to...
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2016-11-08 gmungocJAL-2295 method added to return a compact mapped range...
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2016-11-08 gmungocJAL-2295 extracted AtomSpecModel for reuse in Chimera...
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2016-11-08 gmungocJAL-2295 make RangeComparator a top level class for...
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2016-11-07 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-07 gmungocJAL-1270 renamed helper method so it is not run as...
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2016-11-07 gmungocJAL-2272 another test case
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2016-11-07 gmungocJAL-1805 groups=Functional added where missing
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2016-11-07 gmungocJAL-2272 unit tests added for Platform.isControlDown
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2016-11-07 gmungocJAL-2318 updated help text
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2016-11-07 gmungocJAL-2282 show url links that need checked; remove ...
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2016-11-07 gmungocJAL-2295 handle no progress bar message properly
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2016-11-07 gmungocJAL-2295 small tidy of javadoc only
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2016-11-07 gmungocJAL-2295 (unoptimised) write Jalview features as Chimera...
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2016-11-04 gmungocJAL-2272 right mouse button on Mac is not Cmd equivalent!
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2016-11-04 gmungocJAL-966 JAL-1854 removed redundant methods / modifiers...
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2016-11-04 gmungocJAL-2302 unit tests added for Finder
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2016-11-03 gmungocJAL-2310 don't double-count sequence matches; code...
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2016-11-03 gmungocJAL-2281 test added to show searchRefs is now not case...
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2016-11-03 gmungocJAL-2295 step 1 new menu item to transfer Jalview attributes...
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2016-11-02 gmungocJAL-2301 table formatted, and corrected to match the...
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2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold...
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2016-11-02 gmungocJAL-98 ProfileI interface for Profile
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2016-11-02 gmungocJAL-98 test updated for percentage rounded
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2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis...
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2016-11-02 gmungocJAL-98 wording "negatively conserved" now "absence...
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2016-11-01 gmungocConservation now using ResidueCount; tests added
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2016-11-01 gmungocJAL-98 use Integer constants; tests added for propHash...
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2016-11-01 gmungocJAL-98 typo in javadoc
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