| 2012-07-03 |
jprocter | JAL-961 allow calcId to be specified independently...
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commit | commitdiff | tree |
| 2012-07-03 |
jprocter | JAL-974 - broken copy of feature settings
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commit | commitdiff | tree |
| 2012-07-02 |
jprocter | JAL-1129 progress bar - this patch doesn't provide...
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commit | commitdiff | tree |
| 2012-07-02 |
jprocter | JAL-968 incremental - PNG/EPS output has annotation...
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commit | commitdiff | tree |
| 2012-07-02 |
jprocter | tidy imports
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commit | commitdiff | tree |
| 2012-07-02 |
jprocter | JAL-974 create graduated feature colours for annotation...
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commit | commitdiff | tree |
| 2012-07-02 |
jprocter | JAL-974 - use refactored methods on AlignmentPanel
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commit | commitdiff | tree |
| 2012-07-02 |
jprocter | JAL-974 - refactor FeatureRenderer constructor to AlignmentP...
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commit | commitdiff | tree |
| 2012-07-01 |
jprocter | JAL-1117 alleviate lock starvation
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commit | commitdiff | tree |
| 2012-07-01 |
jprocter | ensure all annotation dependent rendering gets refreshed
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commit | commitdiff | tree |
| 2012-06-29 |
jprocter | JAL-1065 JAL-1066 ensure non-residue based schemes...
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commit | commitdiff | tree |
| 2012-06-29 |
jprocter | JAL-1065 JAL-1066 allow different lookup tables for...
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commit | commitdiff | tree |
| 2012-06-26 |
jprocter | JAL-899 added groovy support to develop branch
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commit | commitdiff | tree |
| 2012-06-20 |
jprocter | formatting
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commit | commitdiff | tree |
| 2012-06-19 |
jprocter | JAL-976 JAL-975 JAL-1119 - pass on any existing parameters...
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commit | commitdiff | tree |
| 2012-06-19 |
jprocter | JAL-975 JAL-1119 - prototype adjustable AACons parameters...
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commit | commitdiff | tree |
| 2012-06-19 |
jprocter | JAL-975 - doh! valid result if width matches *ungapped...
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commit | commitdiff | tree |
| 2012-06-19 |
jprocter | JAL-975 - bespoke AACons settings object to save current...
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commit | commitdiff | tree |
| 2012-06-19 |
jprocter | patch for JAL-1172 ensure option's default value is...
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commit | commitdiff | tree |
| 2012-06-19 |
jprocter | JAL-961 JAL-975 extend api to support removal of workers...
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commit | commitdiff | tree |
| 2012-06-19 |
jprocter | JAL-975 - ensure we only submit ungapped, padded alignment...
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commit | commitdiff | tree |
| 2012-06-15 |
jprocter | formatting
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commit | commitdiff | tree |
| 2012-06-15 |
jprocter | JAL-1125 option to switch between Jalview and SeqSpace...
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commit | commitdiff | tree |
| 2012-06-15 |
jprocter | fix JAL-1122
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commit | commitdiff | tree |
| 2012-06-15 |
jprocter | JAL-1123 - make clear where off-by-one error was occuring...
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commit | commitdiff | tree |
| 2012-06-15 |
jprocter | JAL-535 - refactored core PCA viewer code to viewmodel
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commit | commitdiff | tree |
| 2012-06-15 |
jprocter | JAL-535 refactored core code from PCA viewer to viewmodel.
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commit | commitdiff | tree |
| 2012-06-15 |
jprocter | JAL-1120 patch for desktop
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commit | commitdiff | tree |
| 2012-06-15 |
jprocter | patch for JAL-1121 - reset button and slightly wider...
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commit | commitdiff | tree |
| 2012-06-15 |
jprocter | JAL-535 refactoring todo
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commit | commitdiff | tree |
| 2012-06-15 |
jprocter | Extended IProgressIndicator with method to check if...
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commit | commitdiff | tree |
| 2012-06-15 |
jprocter | Merge branch 'JAL-1013_pca_rna_dna' into develop
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commit | commitdiff | tree |
| 2012-06-14 |
jprocter | JAL-975 JAL-1002 ensure custom parameters are actually...
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commit | commitdiff | tree |
| 2012-06-14 |
jprocter | JAL-1115 - synchronized access to group list
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commit | commitdiff | tree |
| 2012-06-14 |
jprocter | JAL-976 - make sure annotation panel is updated to...
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commit | commitdiff | tree |
| 2012-06-14 |
jprocter | JAL-961 JAL-976 kill any existing AACon job if a new...
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commit | commitdiff | tree |
| 2012-06-14 |
jprocter | JAL-1003 visual delay when running a sequence or alignment...
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commit | commitdiff | tree |
| 2012-06-14 |
jprocter | JAL-961 JAL-976 tweaked way that AACons client is registered...
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commit | commitdiff | tree |
| 2012-06-14 |
jprocter | formatting
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commit | commitdiff | tree |
| 2012-06-14 |
jprocter | formatting
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commit | commitdiff | tree |
| 2012-06-14 |
jprocter | JAL-1118 - hack to try and get rid of flicker. consider...
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commit | commitdiff | tree |
| 2012-06-14 |
jprocter | JAL-1118 WIP - flag to mark if image buffer has just...
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commit | commitdiff | tree |
| 2012-06-14 |
jprocter | JAL-1115 trap exception arising from race condition...
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commit | commitdiff | tree |
| 2012-06-14 |
jprocter | JAL-968 javadoc and return flag indicating if any of...
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commit | commitdiff | tree |
| 2012-06-14 |
jprocter | JAL-961 ensure we only add one instance of a worker...
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commit | commitdiff | tree |
| 2012-06-14 |
jprocter | JAL-961 potentially helpful println statements when...
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commit | commitdiff | tree |
| 2012-06-13 |
jprocter | JAL-1115 refactor base collection for Alignment from...
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commit | commitdiff | tree |
| 2012-06-13 |
jprocter | JAL-1116 - location where vamsas sync failure occurs
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commit | commitdiff | tree |
| 2012-06-13 |
jprocter | javatidy
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commit | commitdiff | tree |
| 2012-06-12 |
jprocter | JAL-1115 refactor reordering code operating directly...
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commit | commitdiff | tree |
| 2012-06-12 |
jprocter | JAL-1115 refactor base collection for Alignment from...
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commit | commitdiff | tree |
| 2012-06-12 |
jprocter | JAL-1115 - use local reference for annotation row
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commit | commitdiff | tree |
| 2012-06-12 |
jprocter | JAL-961, JAL-1115 - pending test to ensure only one...
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commit | commitdiff | tree |
| 2012-06-07 |
jprocter | javatidy
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commit | commitdiff | tree |
| 2012-06-07 |
jprocter | JAL-967, JAL-1114, JAL-1115 more concurrent access...
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commit | commitdiff | tree |
| 2012-06-07 |
jprocter | javatidy
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commit | commitdiff | tree |
| 2012-06-07 |
jprocter | fix for bug introduced with commit:b81d4d7d46ea8b1c89df086fb...
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commit | commitdiff | tree |
| 2012-06-07 |
jprocter | javatidy
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commit | commitdiff | tree |
| 2012-06-07 |
jprocter | JAL-967, JAL-1114, JAL-1115 - modified render and calculatio...
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commit | commitdiff | tree |
| 2012-06-07 |
jprocter | JAL-976 ensure job id gets written out if there's an...
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commit | commitdiff | tree |
| 2012-06-04 |
jprocter | javatidy
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commit | commitdiff | tree |
| 2012-05-31 |
jprocter | javatidy
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commit | commitdiff | tree |
| 2012-05-31 |
jprocter | formatting
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commit | commitdiff | tree |
| 2012-05-30 |
jprocter | JAL-969 - refactor colourscheme machinery from GUI...
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commit | commitdiff | tree |
| 2012-05-30 |
jprocter | JAL-1109 JAL-1065 resolve t-coffee score scheme by...
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commit | commitdiff | tree |
| 2012-05-30 |
jprocter | updated schema to store and recover belowAlignment...
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commit | commitdiff | tree |
| 2012-05-30 |
jprocter | JAL-1114 - refactor methods handling Vectors and Hashtables...
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commit | commitdiff | tree |
| 2012-05-30 |
jprocter | formatting
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commit | commitdiff | tree |
| 2012-05-30 |
jprocter | formatting
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | TODO: JAL-1108
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | JAL-1078 - removed 'Load Score File' menu item and...
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | JAL-1065 per sequence and per-alignment scores added...
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | JAL-1065 - ensure null entries in annotation row so...
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | todo: JAL-1105
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | todo: JAL-1108
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | ensure annotation isn't added twice - note - this could...
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | JAL-1107 - documentation explaining '*' and '+' in...
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | patch for occasional NPE when applet is quit
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | JAL-1078 - extend applet cut'n'paste features/annotation...
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | JAL-1067 report any warning messages to user
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | TODO for JAL-976
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | todo for JAL-1106
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | JAL-1066,JAL-1068,JAL-961 - use alignment annotation...
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | JAL-1067, JAL-1105 - refactor parser to fit Jalview...
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | JAL-961 - annotatable datamodel objects can be queried...
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | JAL-1102 todos and status updates when data is added
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | todo JAL-1104 : functions to refactor
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | todo: blocked by JAL-1104
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | JAL-958 - ensure logo is rendered even if consensus...
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commit | commitdiff | tree |
| 2012-05-22 |
jprocter | update the copy constructor
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commit | commitdiff | tree |
| 2012-05-22 |
jprocter | JAL-1065,JAL-1066 propagated notification of colourscheme...
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commit | commitdiff | tree |
| 2012-05-22 |
jprocter | JAL-1065,JAL-1066 - propagated 863467bf6c59c0bc5368c8f3a03d9...
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commit | commitdiff | tree |
| 2012-05-22 |
jprocter | Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...
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commit | commitdiff | tree |
| 2012-05-16 |
jprocter | warning dialog - fixes JAL-1099
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commit | commitdiff | tree |
| 2012-05-16 |
jprocter | fixed JAL-1086: pass column index so colourscheme profile...
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commit | commitdiff | tree |
| 2012-05-16 |
jprocter | JAL-958 - don't try to draw all zero profiles
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commit | commitdiff | tree |
| 2012-05-16 |
jprocter | JAL-958 JAL-1086 formatting and remove old code
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commit | commitdiff | tree |
| 2012-05-14 |
jprocter | pack before displaying splashscreen to ensure its preferred...
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commit | commitdiff | tree |
| 2012-05-14 |
jprocter | formatting
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commit | commitdiff | tree |
| 2012-05-14 |
jprocter | JAL-1097 - ensure replace comma for semicolon always...
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commit | commitdiff | tree |
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