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JAL-3076 fetch Ensembl sequence as JSON instead of Fasta
2018-09-03 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of...
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2018-08-31 gmungocJAL-3003 remove redundant call to drawSelectionGroup
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2018-08-28 gmungocJAL-3059 use correct border colour for groups
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2018-08-28 gmungocJAL-3003 draw selection group outline on main graphics...
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2018-08-28 gmungocJAL-247 comment to clarify wrapped print algorithm
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2018-08-28 gmungocJAL-247 print/export wrapped uses common code to draw...
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2018-08-28 gmungocJAL-3087 include full alignment height in repeating...
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2018-08-28 gmungocJAL-247 draw/print sequence ids now uses common code...
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2018-06-07 gmungocJAL-2920 format/comment tidy
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2018-06-07 gmungocJAL-2920 wrap description in <html/> if it includes...
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2018-06-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' of https...
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2018-06-06 gmungocJAL-2920 unit tests for 3 or more original or variant...
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2018-05-25 gmungocJAL-2992 simpler heuristic for available height
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2018-05-25 gmungocJAL-2995 tooltip on fields with double-click to browse...
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2018-05-25 gmungocJAL-2994 temporary patch with paths to Chimera for...
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2018-05-24 gmungocJAL-2997 additional tests
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2018-05-23 gmungocJAL-2993 AlignFrame listen for keystrokes in OverviewPanel
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2018-05-23 gmungocJAL-2997 unit test
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2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number...
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2018-05-21 gmungocJAL-2920 use HGVS notation for protein variant feature
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2018-05-09 gmungocJAL-2984 add pdb as sequence(s) if associate structure...
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2018-05-04 gmungocJAL-2906 small tweaks to release notes
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2018-04-23 gmungocJAL-2954 more efficient SearchResults.markColumns
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2018-04-23 gmungocJAL-2952 set negative TempFactor values as AlignmentAnnotati...
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2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency...
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2018-04-13 gmungocMerge branch 'features/JAL-2944_openStructuresInSelectedView...
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2018-04-12 gmungocJAL-2223 don't add duplicate mappings to StructureSelectionM...
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2018-04-12 gmungocJAL-1847 minor post-review updates
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2018-04-12 gmungocJAL-2944 tidies for review comments
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2018-03-22 gmungocJAL-2929 unit test, tidy unused/unneeded fields/parameters
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2018-03-21 gmungocJAL-2929 use configure Overview gap colour instead...
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2018-03-21 gmungocJAL-2754 renamed proguard.jar to include version number
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2018-03-21 gmungocJAL-2754 5.3.3 update of proguard.jar
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2018-03-21 gmungocJAL-2754 update to specify Java 1.8(+)
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2018-03-21 gmungocJAL-2754 update to Java 1.8
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2018-03-16 gmungocJAL-2922 update FeatureRenderer and repaint feature...
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2018-03-15 gmungocJAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
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2018-03-14 gmungocJAL-2893 include ENSEMBLGENOMES as a 'roundtrip db...
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2018-03-14 gmungocJAL-2679 reinstating changes lost in VCF merge
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2018-03-13 gmungocJAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
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2018-03-08 gmungocJAL-2885 tests updated for code changes
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2018-03-08 gmungocJAL-2930 use MouseWheelEvent.getPreciseWheelRotation...
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2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch
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2018-03-07 gmungocJAL-2922 [2] not [1] for Boolean column of table
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2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch
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2018-03-07 gmungocJAL-2922 i18n and bespoke handler for Invert Selection
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2018-03-07 gmungocMerge branch 'bug/JAL-2924nullTooltip' into releases...
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2018-03-07 gmungocJAL-2926 fix copy group consensus (and paste sequence...
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2018-03-07 gmungocJAL-2925 handle empty annotation when copying group...
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2018-03-07 gmungocJAL-2913 use FIGURE_USERIDWIDTH for fixed id width...
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2018-02-28 gmungocJAL-2924 no tooltip over null annotation positions
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2018-02-09 gmungocJAL-2789 avoid using transcript (with no UTR) as CDS...
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2018-02-09 gmungocJAL-2789 code format changes only (before functional...
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2018-02-09 gmungocJAL-2666 fix failure to scroll split alignment of height 1
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2018-02-08 gmungocJAL-2666 basic initial fix for split screen scroll bug
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2018-02-02 gmungocJAL-2899 asynchronous Jmol colour updates
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2018-02-02 gmungocJAL-984 use cursor for drag regions to adjust annotation...
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2018-02-02 gmungocJAL-984 better behaved panel height adjuster
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2018-02-01 gmungocJAL-2899 update structure and overview on slider drag...
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2018-01-29 gmungocMerge branch 'feature/JAL-2759' of https://source.jalview...
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2018-01-29 gmungocJAL-1270 testPadGaps() added
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2018-01-18 gmungocJAL-2810 JAL-2886 i18n
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2018-01-18 gmungocJAL-2679 update query id to actual case of retrieved...
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2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retrieved...
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2018-01-16 gmungocJAL-2679 use object_type=Transcript for lookup of Parent...
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2018-01-16 gmungocJAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
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2018-01-16 gmungocJAL-1270 JAL-2885 clear properties before load
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2017-11-13 gmungocJAL-2662 tweak README, format code
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2017-11-13 gmungocJAL-2176 removed unused Sequence.index
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2017-11-13 gmungocJAL-2679 example accession changed to CAD01290
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2017-11-10 gmungocJAL-2829 fixes and unit tests
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2017-11-10 gmungocJAL-2562 updated findPosition javadoc to match behaviour
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2017-11-10 gmungocJAL-2829 unit tests for failing cases
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2017-10-27 gmungocJAL-2526 updated javadoc
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2017-10-24 gmungocJAL-2495 highlight all mapped sequences from structure...
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2017-10-24 gmungocJAL-2788 corrected merge error in propertyChange
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2017-10-24 gmungocJAL-2787 set start/end seq explicitly for test
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2017-10-23 gmungocJAL-2776 repaint everything on toggle group colour
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2017-10-23 gmungocJAL-1854 keep fallthrough but with comment to suppress...
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2017-10-23 gmungocJAL-1854 remove fallthrough of switch case (Checkstyle...
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2017-10-23 gmungocJAL-2737 JAL-1854 corrected package suppressions, updated...
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2017-10-20 gmungocJAL-2253 pull up constant, additional unit test
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2017-10-20 gmungocJAL-2609 fully erase scale above, tidy code change
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2017-10-19 gmungocJAL-2609 adjustments for test findings
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2017-10-11 gmungocJAL-2609 tests updated for revised label width
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2017-10-11 gmungocJAL-2772 check array bounds for sequence access
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2017-10-11 gmungocJAL-2225 updates for review comments, Checkstyle
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2017-10-11 gmungocJAL-2609 tidy label width code, some checkstyle warnings
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2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop
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2017-10-11 gmungocJAL-2742 set HiddenColumns null for no hidden coluns...
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2017-10-11 gmungocMerge branch 'bug/JAL-2757_uniprotftsbadquery' into...
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2017-10-11 gmungocJAL-2757 fix PDB also; suppress stack trace and compiler...
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2017-10-09 gmungocJAL-2480 use interface type for sequenceFeatureStore
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2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 response...
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2017-10-09 gmungocJAL-2523 convenience method to get model organisms
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2017-10-04 gmungocJAL-2523 start of refactoring...
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2017-10-02 gmungocJAL-2525 lookup transcript features by Ontology
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2017-09-29 gmungocJAL-2745 update www.ebi.ac.uk to https
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2017-09-28 gmungocJAL-2745 update www.ebi.ac.uk to https
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2017-09-28 gmungocJAL-2036 set menus after fully loading AlignFrame
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