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Merge branch 'JAL-1130' into develop
2012-09-21 jprocterMerge branch 'JAL-1130' into develop
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2012-09-21 jprocterJAL-849 try harder and wait for longer for JABAWS to...
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2012-09-21 jprocterJAL-1171 refactor code to allow gui update for global...
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2012-09-21 jprocterJAL-1165 visual delay whilst results are processed.
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2012-09-21 jprocterJAL-1165 allow progress indicators on the web service...
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2012-09-21 jprocterJAL-1130 jalview spinning icon for web service dialog
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2012-09-21 jprocterJAL-1130 splashscreen logo
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2012-09-19 jprocterJAL-1130 new logo in help, splash screen and web services...
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2012-09-19 jprocterJAL-1130 new logo spinner in webservices status window
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2012-09-19 jprocterJAL-1130 large logo
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2012-09-19 jprocterJAL-1130 small rotating logo
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2012-09-19 jprocterJAL-1130 made SplashScreen able to be a dialog that...
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2012-09-19 jprocterJAL-1130 refactored standard hyperlink handler code...
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2012-09-19 jprocterJAL-1130 trial view of new logo on splashscreen.
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2012-09-19 jprocterJAL-1170 column and row positions confused in implementation...
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2012-09-07 jproctertodos
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2012-09-06 jprocterJAL-1065 documentation and image
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2012-09-06 jprocterJAL-958
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2012-09-06 jprocterJAL-842 documentation
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2012-09-06 jprocter2.7.1 squashed
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2012-09-06 jproctertypo
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2012-09-06 jprocterJAL-1065 whats new entry for tcoffee scores
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2012-09-06 jprocterfix image link
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2012-09-06 jprocterJAL-958 documented logo menu items
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2012-09-06 jproctermerge new 2.7.1 and 2.8 features into one
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2012-09-06 jproctertypo
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2012-09-06 jprocterJAL-958 flag indicating if visualization settings for...
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2012-09-06 jprocterJAL-958 store/recover normalised flag
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2012-09-06 jprocterJAL-958 store normalised flag in jalview project
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2012-09-06 jprocterPCA what's new and score matrix documentation page
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2012-09-06 jprocterJAL-1013 JAL-1167 JAL-1121 JAL-1125
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2012-09-06 jprocterJAL-1027 JAL-1167 documentation and patched DNA/RNA...
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2012-09-06 jprocterJAL-1013 - employ index parameter rather than hardcode...
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2012-09-06 jprocterJAL-1167 method and simple tests for printing score...
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2012-09-05 jprocterJAL-979 tidy up shmmr hardcoded WS definition
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2012-09-05 jprocterJAL-1136 give pre-existing custom settings a special...
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2012-09-05 jprocterformatting
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2012-09-05 jprocterpatch for NPE when no services are available to resolve...
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2012-09-05 jprocterJAL-975 null any existing preset if user has supplied...
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2012-09-05 jprocterJAL-1162 catch security exception and just use bare...
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2012-09-05 jprocterJAL-994 fix when sequence is too short and no jobs run
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2012-09-05 jprocterJAL-1111 allow news reader window to be moved even...
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2012-09-05 jprocterJAL-976 fix AACon name typo in source and GUI
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2012-09-04 jproctertypo
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2012-09-04 jprocterJAL-976 documentation for disorder, AACon, ClustalO...
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2012-09-04 jprocterJAL-975 note about black colouring bug
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2012-09-04 jprocterJAL-1066 documentation for per-sequence annotation...
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2012-09-04 jprocterJAL-1060 new dialog box image
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2012-09-04 jprocterJAL-1060 documentation for new layout
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2012-09-04 jprocteroff by one for sequence associated annotation
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2012-09-04 jprocterunused variable
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2012-09-04 jprocterJAL-974 JRonn thresholds
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2012-09-03 jprocterJAL-591 adapt option layout to width of dialog box
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2012-09-03 jprocterJAL-975 JAL-974 JAL-976 always adjust height after...
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2012-09-03 jprocterJAL-974 show thresholds for disorder predictor annotation...
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2012-09-03 jprocterJAL-1153 ensure _linecolour is copied in copy constructor
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2012-09-03 jprocterJAL-1111 news reader shouldn't be modal.
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2012-09-03 jprocterJAL-1111 doh - helps if you pass modality flag onto...
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2012-09-02 jprocterJAL-812 only trigger alignment redraw and calculation...
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2012-09-02 jprocterJAL-1007 refactored code and patched calculation bug
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2012-09-02 jprocterJAL-1015 documentation for basic HTML sequence annotation...
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2012-09-02 jprocterJAL-1075 JAL-1062 documentation and new figure for...
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2012-09-02 jprocterJAL-1158 - request focus after opening window.
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2012-09-02 jprocterJAL-659 cope with case insensitive accessions by forcing...
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2012-09-02 jprocterJAL-1062 JAL-659 correct start position for retrieved...
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2012-09-02 jprocterJAL-1062 use matching region or first section of sequence...
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2012-09-01 jprocterJAL-1075 sort nodes alphabetically
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2012-09-01 jprocterJAL-1160 support horizontal mouse wheel scrolling events
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2012-09-01 jprocterJAL-1161 JAL-1160 implement custom mousewheel listener...
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2012-09-01 jprocterjavadoc
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2012-08-31 jprocterJAL-1015 equivalent menu items for applet - not visible...
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2012-08-31 jprocterJAL-1015 new menu items in desktop popup menu for creating...
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2012-08-31 jprocterJAL-1015 resolve dataset sequence before searching...
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2012-08-31 jprocterJAL-1157 new window for displaying HTML formatted text...
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2012-08-31 jprocterJAL-1015 refactor tooltip html generation code to jalview...
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2012-08-31 jprocterJAL-974 - ensure annotation created in local sequence...
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2012-08-31 jprocterJAL-1064 patch for NPE when registerd database names...
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2012-08-29 jprocterJAL-1155 fix panel length calculation for grouped graphs...
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2012-08-29 jprocterJAL-1066 limit available rows to per-sequence when...
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2012-08-29 jprocterJAL-974 skip empty rows
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2012-08-29 jprocterJAL-974 set GlobPlot raw/smooth score annotation rows...
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2012-08-29 jprocterformatting
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2012-08-29 jprocterJAL-1153 JAL-1155 improved layout and allowed labels...
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2012-08-29 jprocterJAL-1153 new runtime property set to first non-null...
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2012-08-29 jprocterJAL-48 patch NPE when encountering an alignment window...
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2012-08-28 jprocterremove contaminant imports
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2012-08-28 jprocterremove contaminant imports
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2012-08-28 jprocterJAL-676 JAL-1001 - simple menu item to access documentation...
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2012-08-28 jprocterformatting
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2012-08-28 jprocterJAL-1066 basic gui and functionality for per-sequence...
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2012-08-28 jprocterJAL-1066 - per-sequence colouring with sequence associated...
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2012-08-28 jprocterformatting
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2012-08-28 jprocterJAL-1145 patch: sequence associated annotation with...
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2012-08-28 jprocterJAL-974 create mixture of sequence features marking...
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2012-08-28 jprocterJAL-974 refactored creation of Annotation rows from...
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2012-08-28 jprocterJAL-974 JAL-975 try to cope with temporary server errors...
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2012-08-28 jprocterJAL-1136 sometimes there are no parameters associated...
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2012-08-28 jprocterJAL-1001 - hack to extract the global URL for a service...
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2012-08-28 jprocterjavadoc and note about broken semantics for findIndex
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2012-08-28 jprocterJAL-1149 patch
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