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2020-12-01	Ben Soares	JAL-3775 Adding Mockito jars for tests. Needed for...	commit \| commitdiff \| tree
2020-12-01	Ben Soares	JAL-3660 Fix for specified output format when using...	commit \| commitdiff \| tree
2020-12-01	Ben Soares	JAL-3530 Added a -nowebservicediscovery command line...	commit \| commitdiff \| tree
2020-11-13	Jim Procter	JAL-3757 JAL-3689 use AppletFormat.checkProtocol to...	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3757 JAL-3689 Fixed checks for URLs by adding checks...	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3775 Re-compiled Getdown jars	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3775 Eclipse re-formatting commit	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3633 last minute refinement so password box doesn...	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3633 Apply (proxy) button enabled when needed	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3633 Help documentation updated	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3633 Small changes to allow future fitting with...	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3275 JAL-3633: JAL-3275 Turned Preferences into...	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3633 Set proxy preferences before web calls in...	commit \| commitdiff \| tree
2020-11-13	Ben Soares	JAL-3633 Memory only proxy auth password storage. Open...	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3633 Added Proxy Authentication credentials in...	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3633 Added Preferences for Proxy Authentication...	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3633 label.proxy_server -> label.proxy_servers	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3633 Remember system set proxy properties. Add...	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3633 pass getdown proxy settings in proxy.txt on...	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3633 ensure check both http:// or https:// for...	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3628 Error when saving alert box has been moved...	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3676 More explicit tooltip about resetting log...	commit \| commitdiff \| tree
2020-11-12	Ben Soares	JAL-3676 Removed BACKUPFILESPRESETENTRY logging for...	commit \| commitdiff \| tree
2020-11-10	Ben Soares	JAL-3628 Fixed oddly worded and non-formatted error...	commit \| commitdiff \| tree
2020-11-10	Ben Soares	JAL-3676 improvement for visual selection of console...	commit \| commitdiff \| tree
2020-11-10	Ben Soares	JAL-3676 code review -- added non-listed Level into...	commit \| commitdiff \| tree
2020-11-10	Ben Soares	JAL-3676 Added Log Level ComboBox and Copy to Clipboard...	commit \| commitdiff \| tree
2020-11-10	Ben Soares	JAL-3628 Fix for slightly incorrect boolean usage to...	commit \| commitdiff \| tree
2020-11-10	Ben Soares	JAL-3628 Even more Cache.log.debug statements	commit \| commitdiff \| tree
2020-11-10	Ben Soares	JAL-3628 More Cache.log.debug statements	commit \| commitdiff \| tree
2020-11-06	Ben Soares	JAL-3628 Changed other calls to renameTo to use BackupFiles...	commit \| commitdiff \| tree
2020-11-06	Ben Soares	JAL-3628 Changed all file1.renameTo(file2) calls to...	commit \| commitdiff \| tree
2020-11-06	Ben Soares	JAL-3609 formatting save after cherry-picks	commit \| commitdiff \| tree
2020-11-06	Ben Soares	JAL-3609 Allow pass-through of setHiDPIScale property...	commit \| commitdiff \| tree
2020-11-06	Ben Soares	JAL-3609 Report when scale setting used.	commit \| commitdiff \| tree
2020-11-06	Ben Soares	JAL-3609 New auto-scale 'formula' for linux HiDPI....	commit \| commitdiff \| tree
2020-11-06	soares	JAL-3609 corrected maxdimension to mindimension. Adjusted...	commit \| commitdiff \| tree
2020-11-06	Ben Soares	JAL-3609 removed debugging prints	commit \| commitdiff \| tree
2020-11-06	Ben Soares	JAL-3609 changed property names to something more palatable...	commit \| commitdiff \| tree
2020-11-06	Ben Soares	JAL-3609 system properties to force a scale, or automaticall...	commit \| commitdiff \| tree
2020-11-06	Ben Soares	JAL-3609 Added a -DforceHiDPISetting=true option mainly...	commit \| commitdiff \| tree
2020-11-05	Ben Soares	JAL-3608 cherry pick of 92cb745e7	commit \| commitdiff \| tree
2020-10-29	Ben Soares	JAL-3248 Added mention of version 'TEST' in shadow...	commit \| commitdiff \| tree
2020-10-29	Ben Soares	JAL-3248 Fixed path typos in building.md/html and corrected...	commit \| commitdiff \| tree
2020-10-28	Ben Soares	JAL-3248 Added step to create the eclipse files before...	commit \| commitdiff \| tree
2020-10-15	Ben Soares	Merge branch 'develop' into blocker/JAL-3611_space_character...	commit \| commitdiff \| tree
2020-09-28	Ben Soares	JAL-3753 ensure correct dependencies for shadowJar...	commit \| commitdiff \| tree
2020-09-28	Ben Soares	Merge branch 'develop' into bug/JAL-3753_resources_duplicate...	commit \| commitdiff \| tree
2020-09-25	Ben Soares	JAL-3577 Removed default JALVIEW_VERSION from gradle...	commit \| commitdiff \| tree
2020-09-24	Ben Soares	JAL-3577 Quick fix adding quotation marks for findProperty...	commit \| commitdiff \| tree
2020-09-23	Ben Soares	Merge branch 'develop' into bug/JAL-3753_resources_duplicate...	commit \| commitdiff \| tree
2020-09-23	Ben Soares	JAL-3477 Added 10k leeway to amount of memory reserved...	commit \| commitdiff \| tree
2020-09-23	Ben Soares	JAL-3753 Resources seen in tests and appropriate filters...	commit \| commitdiff \| tree
2020-09-20	Ben Soares	JAL-3753 put resources in gradle run and test path	commit \| commitdiff \| tree
2020-09-18	Ben Soares	JAL-3753 JAL-3754 first rejig	commit \| commitdiff \| tree
2020-09-14	Ben Soares	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2020-09-14	Ben Soares	JAL-3718 force re-initialise of getdown.txt file when...	commit \| commitdiff \| tree
2020-09-14	Ben Soares	JAL-3718 force re-initialise of getdown.txt file when...	commit \| commitdiff \| tree
2020-09-14	Ben Soares	Merge branch 'feature/JAL-3615gzipXfam' into develop	commit \| commitdiff \| tree
2020-09-14	Ben Soares	JAL-3609 HiDPI scale setting done via system prop in...	commit \| commitdiff \| tree
2020-09-11	Ben Soares	JAL-3679 Added externally specified plugins dir to...	commit \| commitdiff \| tree
2020-09-04	Ben Soares	JAL-3679 Added externally specified plugins dir to...	commit \| commitdiff \| tree
2020-09-03	gmungoc	JAL-3648 resize annotation panel after dragging to...	commit \| commitdiff \| tree
2020-09-03	Ben Soares	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2020-08-20	Ben Soares	JAL-2656 better read of (potential) gzip magic bytes	commit \| commitdiff \| tree
2020-08-13	Ben Soares	JAL-3597 Increased heap passmark to <= 45MB and report...	commit \| commitdiff \| tree
2020-08-12	Ben Soares	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2020-08-09	Ben Soares	JAL-3691 Changed .toUppoerCase().startsWith(...) to...	commit \| commitdiff \| tree
2020-08-04	Ben Soares	JAL-3477 Improved command line arguments description...	commit \| commitdiff \| tree
2020-08-04	Ben Soares	JAL-3477 Added -help text for jvmmempc and jvmmemmax...	commit \| commitdiff \| tree
2020-08-03	Ben Soares	JAL-3477 added help documentation for executable jar...	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3608 Changes from code review CR-JAL-236	commit \| commitdiff \| tree
2020-06-02	Ben Soares	JAL-3225 Using Gradle Git-Version plugin to set gitHash...	commit \| commitdiff \| tree
2020-04-06	Ben Soares	JAL-3577 Changed shortName to INTERNAL_ID	commit \| commitdiff \| tree
2020-04-05	Ben Soares	JAL-3577 Changed Windows internal ID to a new value...	commit \| commitdiff \| tree
2020-04-05	Ben Soares	JAL-3577 Changed Windows internal ID to a new value...	commit \| commitdiff \| tree
2020-04-02	Ben Soares	JAL-3577 First attempt at new folder names	commit \| commitdiff \| tree
2020-03-04	Ben Soares	JAL-3468 Fixed tests and added test for max-length...	commit \| commitdiff \| tree
2020-03-04	Ben Soares	JAL-3468 Obsessively fixed self-closing <br/> tags	commit \| commitdiff \| tree
2020-02-08	Ben Soares	JAL-3179 Version fix for taskTree gradle task in gradle 6	commit \| commitdiff \| tree
2019-11-13	Ben Soares	JAL-3210 add more memory to javaexec running closure...	commit \| commitdiff \| tree
2019-11-13	Ben Soares	JAL-3210 task jalviewjsIDE_checkJ2sPlugin compares...	commit \| commitdiff \| tree
2019-11-12	Ben Soares	JAL-3210 working in Eclipse improvements	commit \| commitdiff \| tree
2019-11-11	Ben Soares	JAL-3210 minor fix	commit \| commitdiff \| tree
2019-11-11	Ben Soares	Revert "JAL-3210 merging in Jalview-JS/develop"	commit \| commitdiff \| tree
2019-11-11	Ben Soares	JAL-3210 Moved local.properties override into ext,...	commit \| commitdiff \| tree
2019-11-10	Ben Soares	JAL-3210 merging in Jalview-JS/develop	commit \| commitdiff \| tree
2019-11-10	Ben Soares	JAL-3210 _jalview core published, added to jalviewjsTest...	commit \| commitdiff \| tree
2019-11-05	Ben Soares	JAL-3274 .build_properties now copied to j2s in jalviewjs...	commit \| commitdiff \| tree
2019-11-05	Ben Soares	Merge branch 'Jalview-JS/develop' into Jalview-JS/develop_wi...	commit \| commitdiff \| tree
2019-11-01	Ben Soares	JAL-3210 Automatic buildship/eclipse update to site...	commit \| commitdiff \| tree
2019-10-23	Ben Soares	JAL-3210 changed .classpath in eclipse_files.zip	commit \| commitdiff \| tree
2019-10-21	Ben Soares	JAL-3210 added absolute path for transpile log	commit \| commitdiff \| tree
2019-10-21	Ben Soares	JAL-3210 Improved/fixed the tempdir creation/storage...	commit \| commitdiff \| tree
2018-08-27	Ben Soares	JAL-3061 / JAL-3053	commit \| commitdiff \| tree
2018-08-03	Ben Soares	JAL-3061	commit \| commitdiff \| tree
2018-08-03	Ben Soares	Merge branch 'bug/JAL-3061_RNA_secondary_structure_annotatio...	commit \| commitdiff \| tree
2018-08-02	Ben Soares	JAL-3053	commit \| commitdiff \| tree

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