jalview.git
2019-07-05 gmungocJAL-3187 initial refactoring towards peptide variant...
2019-07-05 gmungocJAL-1793 apply URL decoding when saving VCF attribute...
2019-06-18 gmungocJAL-3187 javadoc
2019-06-18 gmungocJAL-3304 option to export linked features also for...
2019-06-18 gmungocJAL-3304 option to export linked features in Jalview...
2019-06-18 gmungocJAL-3187 i18n show linked features checkboxes
2019-06-18 gmungocJAL-3305 mirror popup menu column selections in split...
2019-06-17 gmungocJAL-2792 JAL-3187 linked features (if shown) in Feature...
2019-06-17 gmungocJAL-3187 update alignAs code and unit tests for 'shared...
2019-06-17 gmungocJAL-3187 update unit test - protein variants not now...
2019-06-17 gmungocJAL-3187 add sequence to feature details table (and...
2019-06-14 gmungocJAL-3302 transfer visible 'linked' features to Chimera
2019-06-13 gmungocJAL-3303 ignore deletions when computing peptide variants
2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
2019-06-11 gmungocJAL-3143 also parse "phase" from JSON response if present
2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
2019-06-11 gmungocJAL-3111 update release date placeholder
2019-06-11 gmungocJAL-3288 fixes for gain/lose focus
2019-06-11 gmungocJAL-3187 CDS has same dataset sequence as transcript
2019-06-10 Ben SoaresJAL-3248 quick fix for build.gradle when pandoc not...
2019-06-10 Ben SoaresJAL-3248 building.html now generated by pandoc 'brew...
2019-06-10 Ben SoaresJAL-3248 added conversion of building.md to building...
2019-06-10 Ben SoaresMerge branch 'develop' into task/JAL-3248_rewritten_bui...
2019-06-10 Ben SoaresMerge branch 'task/JAL-3248_rewritten_building_md_instr...
2019-06-10 Ben SoaresJAL-3248 Building from source documentation in markdown...
2019-06-10 Ben SoaresJAL-3248 Building from source documentation in markdown...
2019-06-07 Ben SoaresJAL-3248 Almost completed building doc
2019-06-07 gmungocJAL-3187 save and restore flags for show complement...
2019-06-07 gmungocJAL-3187 change fields to local variables
2019-06-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
2019-06-07 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into...
2019-06-07 Ben SoaresJAL-3248 a bit more
2019-06-07 gmungocJAL-3187 Viewport schema attributes for showComplementF...
2019-06-07 gmungocJAL-3251 added optional attributes Sequence.biotype...
2019-06-07 gmungocJAL-2738 use GeneLocus extends DBRefEntry to hold chrom...
2019-06-07 Ben SoaresMerge branch 'develop' into task/JAL-3248_rewritten_bui...
2019-06-07 Ben SoaresJAL-3225 removing slightly misleading rewrite of .class...
2019-06-06 Ben SoaresJAL-3225 Classpath now made in eclipse.classpath.file...
2019-06-06 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into...
2019-06-06 gmungocJAL-3187 deletions (of Castor code) after merge from...
2019-06-06 gmungocMerge branch 'develop' into trialMerge
2019-06-06 gmungocJAL-3187 commit to enable merge from develop
2019-06-05 gmungocJAL-3288 override JInternalFrame.setSelected() to avoid... bug/JAL-3288splitFrameMenusJava11
2019-06-04 Ben SoaresJAL-3287 correct local file URI for appbase and getdown...
2019-06-04 Ben SoaresJAL-3287 adjustment to HelpLinksChecker
2019-06-04 Ben SoaresJAL-3287 adjustment to HelpLinksChecker to run in Windo...
2019-06-04 Ben SoaresJAL-3248 small edits
2019-05-31 Ben SoaresJAL-3247 Adjusted Uninstall Old Jalview.app to just...
2019-05-31 Ben SoaresJAL-3248 extra tl;dr
2019-05-30 Ben SoaresJAL-3248 Essential tl;dr :)
2019-05-30 Ben SoaresMerge branch 'develop' into task/JAL-3248_rewritten_bui...
2019-05-29 gmungocJAL-2738 error logging if no ##reference found
2019-05-29 gmungocJAL-2738 accept .csi, default to GRCh37:homo_sapiens...
2019-05-28 Ben SoaresJAL-3277 Fixed getdown splashscreen. For unknown reason...
2019-05-28 Ben SoaresJAL-1988 Some TEST code accidentally left in now remove...
2019-05-28 Jalview Development... JAL-3247 sign the AppleScript uninstaller
2019-05-28 Ben SoaresJAL-3141 deleted TODO comment in Messages_es
2019-05-28 Ben SoaresMerge branch 'develop' into task/JAL-3141_JAL-3247_merge
2019-05-28 Ben SoaresJAL-3248 saving
2019-05-27 Ben SoaresJAL-3141 Added HashMap types for Java 1.8 compatibility
2019-05-27 Ben SoaresMerge branch 'task/JAL-3141_Customise_checkbox' into...
2019-05-27 Ben SoaresJAL-3141 Object array cast missing
2019-05-27 Ben SoaresMerge branch 'task/JAL-3247_JAL-3246_JAL-3254_JAL-3236_...
2019-05-27 Ben SoaresMerge branch 'develop' into task/JAL-3247_JAL-3246_JAL...
2019-05-27 Ben SoaresJAL-3247 Added AppleScript based App to run old Jalview...
2019-05-27 Ben SoaresJAL-3141 Generified the JvUtils.buildComboWithTooltips...
2019-05-27 gmungocJAL-3141 test file in test folder not examples
2019-05-25 Ben SoaresJAL-3141 One more error log fix
2019-05-25 Ben SoaresJAL-3141 Added tooltips on Schemes dropdown and Customi...
2019-05-24 Ben SoaresJAL-3141 Fixes recommended from gmc's test
2019-05-24 gmungocJAL-1988 Spanish typo corrección
2019-05-24 Ben SoaresJAL-3141 Fixed vertical size of the example filenames...
2019-05-24 Ben SoaresJAL-3141 Fixed tests
2019-05-24 Ben SoaresJAL-3141 Reworked a lot of BackupFiles to allow the...
2019-05-22 Ben SoaresMerge branch 'bug/JAL-3141_backupfiles_prefs_widget_dis...
2019-05-22 gmungocJAL-3111 help file spelling correction
2019-05-21 Ben SoaresJAL-3247 Launcher start improvements. RPM and DEB no...
2019-05-21 gmungocJAL-3273 small correction to expected result calculation
2019-05-20 Ben SoaresMerge branch 'task/JAL-3254_improved_max_memory_stack_s...
2019-05-20 Ben SoaresJAL-3247 Unix shell installer and tar archive corrected...
2019-05-20 Ben SoaresJAL-3254 Improved memory setting (allows mem for OS...
2019-05-13 Jim ProcterMerge branch 'task/JAL-3247_Install4j_improvements...
2019-05-13 Ben SoaresMerge branch 'task/JAL-3236_install4j_linux_unix_userla...
2019-05-13 Ben SoaresJAL-3247 nogradle option on this mac build/install...
2019-05-13 Ben SoaresJAL-3247 JAL-3254 JAL-3260 Fixed: JVL file jalview...
2019-05-10 Jim ProcterMerge branch 'task/JAL-3246_local_getdown_files' into...
2019-05-10 Ben SoaresJAL-3246 JAL-3247 Reworked JVL files as getdown.txt...
2019-05-10 Jim ProcterMerge branch 'task/JAL-3236_install4j_linux_unix_userla...
2019-05-09 Ben SoaresJAL-3236 Added unixInstaller to install4jMediaTypes...
2019-05-09 Jim ProcterMerge branch 'task/JAL-3246_local_getdown_files' into...
2019-05-09 Ben SoaresJAL-3247 JAL-3254 Ensure .jvp and .jvl appear first...
2019-05-09 Ben SoaresJAL-3247 JAL-3254 Fixed file association launch behavio...
2019-05-08 Ben SoaresJAL-3246 add -Pgetdown_local=true to use local files
2019-05-08 Ben SoaresJAL-3247 JAL-3254 changing default location of jalview...
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Getdown now opening any files thrown...
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Automatically creating correct file...
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Automatically creating correct file...
2019-05-08 Ben SoaresJAL-3247 Script to produce auto file association files...
2019-05-08 Ben SoaresJAL-3247 Note in launcher.log when using a JVL file
2019-05-07 Ben SoaresJAL-3247 Changed JVL file to be a props file, with...
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