jalview.git
2023-07-13 James ProcterJAL-4229 beginnings of test to verify VARNA and Helices... bug/JAL-4229_varna_helix_mapping_offby1
2023-07-13 James ProcterJAL-4227 accept extended WUSS in filter
2023-07-13 James ProcterJAL-4227 failing test for extended WUSS not filtered...
2023-07-13 James ProcterJAL-4227 SAM RF00162 round trip test - currently fails
2023-07-12 James ProcterJAL-4223 - test and patch to ensure numbering matches...
2023-07-07 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into...
2023-07-07 James ProcterJAL-4217 JAL-629 built in 25s time out waiting for...
2023-07-07 James ProcterJAL-4090 update 2.11.3.0 release notes (with in-progres...
2023-07-07 James ProcterMerge branch 'patch/JAL-4119_sifts_ftp_split' into...
2023-07-07 James ProcterMerge branch 'develop' into patch/JAL-4195_cli_eps_expo... patch/JAL-4195_cli_eps_export_npe
2023-07-07 James ProcterJAL-4195 add exception handling for all other CommandsT...
2023-07-07 James ProcterJAL-4221 update description when transferring annotatio...
2023-07-07 James ProcterJAL-629 even more console debug for --structureviewer...
2023-07-06 James ProcterJAL-629 liberal defensive coding, comments about refact...
2023-07-06 James ProcterJAL-629 make —structure image work again after threadin...
2023-07-06 James ProcterJAL-4217 catch case when the structure viewer doesn...
2023-07-06 James ProcterJAL-4217 interruptedExceptions should also break any...
2023-07-06 James ProcterJAL-2292 verify mixed case alignment actually aligns
2023-07-06 James ProcterJAL-4217 wrap imageExport CLI method's call to imageExp...
2023-07-06 James ProcterJAL-4217 wrap imageExport CLI method's call to imageExp...
2023-07-05 James ProcterMerge branch 'patch/JAL-2292_caseSensitivePAE' into...
2023-07-05 James ProcterMerge branch 'patch/JAL-4213_addref_with_selection...
2023-07-04 James ProcterMerge branch 'merge/from_2_11_2_7_to_2_11_3_0' into...
2023-07-04 James ProcterJAL-4117 JAL-1551 source licensing
2023-07-04 James ProcterJAL-4117 Fri June 30th release of 2.11.2.7 with Jalview...
2023-06-30 James ProcterJAL-4217 try really hard to shut down and dispose of...
2023-06-30 James ProcterJAL-4216 release notes
2023-06-30 James ProcterJAL-4216 compute size of annotation using start/end...
2023-06-30 James ProcterMerge branch 'task/JAL-4001_Plausible_API' into develop
2023-06-30 Ben SoaresJAL-4001 Added a random id to User-Agent to ensure... task/JAL-4001_Plausible_API
2023-06-29 James ProcterMerge branch 'task/JAL-4001_Plausible_API' into develop
2023-06-29 James ProcterJAL-4117 JAL-4001 plausible analytics release notes...
2023-06-29 James ProcterJAL-4090 update from 2.11.2.7 JAL-4117 - version bump...
2023-06-29 James ProcterJAL-4001 analytics url provided by https://jalview...
2023-06-28 Ben SoaresJAL-4001 change Plausible discovery URL
2023-06-28 Ben SoaresJAL-4001 remove headless code from analytics
2023-06-28 Ben SoaresJAL-4001 Remove analytics for --headless mode
2023-06-27 Ben SoaresJAL-4001 Added useful props information
2023-06-22 Ben SoaresMerge branch 'develop' into task/JAL-4001_Plausible_API
2023-06-22 Ben SoaresJAL-4001 Fix default API url
2023-06-22 James ProcterJAL-4213 don’t pass active selection when actioning... patch/JAL-4213_addref_with_selection
2023-06-22 James ProcterJAL-4213 - document the addReferenceAnnotations method...
2023-06-22 Ben SoaresJAL-4001 Added 'installation' property.
2023-06-22 James ProcterJAL-2292 - ensure mapping is built for equal symbols... patch/JAL-2292_caseSensitivePAE
2023-06-22 Ben SoaresJAL-4001 Added lookup to https://jalview.org/config...
2023-06-22 Ben SoaresJAL-4019 corrected to '>' to '>=' for percentage compar... bug/JAL-4125_flatlaf_quithandler_external_structureviewers_not_closed
2023-06-21 James ProcterMerge branch 'patch/JAL-4196_structure_viewer_synchroni... patch/JAL-4196_structure_viewer_synchronising
2023-06-21 Ben SoaresJAL-4001 Rationalise user-agent string into HttpUtils
2023-06-21 Ben SoaresJAL-4001 Change wording from google to plausible or...
2023-06-20 Ben SoaresJAL-4001 rename the init method
2023-06-20 Ben SoaresJAL-4001 Working Plausible analytics
2023-06-20 Ben SoaresJAL-4001 Plausible class
2023-06-20 Ben SoaresJAL-4001 Added a genuine client_id (from gtag). Added... task/JAL-4001_migrate_googleanalytics_to_GA4
2023-06-17 Ben SoaresJAL-4001 Check --nousagestats before doing analytics...
2023-06-16 Ben SoaresJAL-4001 Add a _geo=1 to query string and JSON. Add...
2023-06-16 Ben SoaresJAL-4001 Remove jgoogleanalytics code and jar
2023-06-16 Ben SoaresJAL-4001 make page_location the same encoding as the...
2023-06-15 Ben SoaresJAL-4001 Changed for Java 8 compatibility
2023-06-14 Ben SoaresJAL-4001 Trying to see extra information in GA dashboard
2023-06-14 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl...
2023-06-13 Ben SoaresJAL-3599 Tidyup for all OS to use ScheduledExecutor
2023-06-12 Ben SoaresJAL-3599 replaced a build dependency for jalviewjsLaunc...
2023-06-11 Ben SoaresJAL-3599 Cater for macOS. ScheduledExecutor timeout...
2023-06-11 Ben SoaresJAL-3599 Cater for macOS. --timeout not working yet
2023-06-09 Ben SoaresJAL-3599 Make jalviewjs dependOn jalviewjsLaunchTest...
2023-06-09 Ben SoaresJAL-3599 Deliberate NPE to see if build plan fails
2023-06-09 Ben SoaresJAL-3599 fixed placement of 'First Run' file for chromi...
2023-06-09 Ben SoaresJAL-3599 --no-sandbox --disable-gpu and Thorium flatpak...
2023-06-09 Ben SoaresJAL-3599 STDOUT and STDERR saved and sent to System...
2023-06-09 Ben SoaresJAL-3599 Not redirecting STDOUT or STDERR just for...
2023-06-09 Ben SoaresJAL-3599 More stderr/stdout output to logs when anything
2023-06-09 Ben SoaresJAL-3599 More stderr/stdout output to logs when failed
2023-06-09 Ben SoaresJAL-3599 increase real and virtual time chrome runs...
2023-06-08 Ben SoaresJAL-3599 gradle tasks to test JalviewJS launches in...
2023-06-08 Ben SoaresJAL-4001 Only send defaultParams for application_launch...
2023-06-08 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl...
2023-06-08 James ProcterMerge branch 'develop' into patch/JAL-4196_structure_vi...
2023-06-08 James ProcterJAL-4196 make very sure we avoid CME by defensively...
2023-06-08 James ProcterJAL-4196 report an error if structure view doesn’t...
2023-06-08 James ProcterJAL-4196 structure view cli tests wait using new jalvie...
2023-06-08 Ben SoaresJAL-3416 FlatLaf SystemInfo failing in JalviewJS. ...
2023-06-08 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl...
2023-06-08 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into...
2023-06-07 Ben SoaresJAL-4001 Javadoc for the method to use
2023-06-07 James ProcterJAL-4195 add exception handling for all image output...
2023-06-07 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into...
2023-06-07 James ProcterJAL-4195 catch thrown exceptions (if any) during image...
2023-06-07 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl...
2023-06-07 Ben SoaresMerge branch 'develop' into improvement/JAL-4193_cl_arg... improvement/JAL-4193_cl_arg_prevent_startup_file
2023-06-07 Ben SoaresJAL-4001 Added more params for application_launch
2023-06-07 Ben SoaresJAL-4001 removed a test param
2023-06-07 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl...
2023-06-07 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl...
2023-06-07 Ben SoaresJAL-4001 GA4 tracking is now ENABLED. Currently loggin...
2023-06-07 James ProcterJAL-4195 tidy up desktop instances after creating them
2023-06-06 James ProcterJAL-4195 report full stack trace for exceptions raised...
2023-06-06 James ProcterJAL-4160 --colour can now take user defined scheme...
2023-06-06 James ProcterJAL-4160 JAL-4195 wait around until alignFrame calculat...
2023-06-06 James ProcterJAL-1551 formatting and javadoc for ArgParser rather...
2023-06-06 James ProcterJAL-629 - remove TODO from jalview.bin.Jalview since...
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