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jalview.git
2016-11-24 tcofoegbuJAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring commit | commitdiff | tree | snapshot
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane commit | commitdiff | tree | snapshot
2016-11-24 tcofoegbuJAL-2326 added layer of abstraction between Jalview... commit | commitdiff | tree | snapshot
2016-11-22 tcofoegbuMerge branch 'bug/JAL-2277_refactorPrintUnwrapped'... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterJAL-2325 update release date for 2.10.1
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2016-11-22 Jim ProcterMerge branch 'develop' into documentation/JAL-2325_rele... commit | commitdiff | tree | snapshot
2016-11-22 gmungocJAL-2337 fix: only adjust once for scroll offset bug/JAL-2277_refactorPrintUnwrapped commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-11-22 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-22 tcofoegbuJAL-2322 added runnable interface to HTMLOutput class... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterJAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie... commit | commitdiff | tree | snapshot
2016-11-22 gmungocJAL-2277 refactored AlignmentPanel.printUnwrapped to... commit | commitdiff | tree | snapshot
2016-11-21 tcofoegbuJAL-2277 bug fix for mis-alligned graphics output for... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2325 JAL-2118 2.10.0 patch in release note commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterMerge branch 'develop' into documentation/JAL-2325_rele... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2284 documentation for the new command-line option commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2325 post-document JAL-2284 released in 2.10.0 commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2325 release notes for JAL-2317 commit | commitdiff | tree | snapshot
2016-11-21 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-21 tcofoegbuJAL-2332 bugfix to enable structure chooser opening... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-1888 JAL-2325 release 2.9.0b1 notes updated post... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-1723 release notes and note in documentation about... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2325 update release 2.10.0 release notes for JAL... commit | commitdiff | tree | snapshot
2016-11-18 Jim ProcterMerge branch 'bug/JAL-98consensusMemory' into develop commit | commitdiff | tree | snapshot
2016-11-18 gmungocJAL-98 with the two types missing from last commit... bug/JAL-98consensusMemory commit | commitdiff | tree | snapshot
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns commit | commitdiff | tree | snapshot
2016-11-17 gmungocJAL-98 javadoc, third party acknowledgements (and very... commit | commitdiff | tree | snapshot
2016-11-16 Jim ProcterMerge branch 'features/JAL-1723_sequenceReport' into... commit | commitdiff | tree | snapshot
2016-11-16 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-11-16 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-16 Jim ProcterJAL-2325 release notes for 2.10.1 - pass one commit | commitdiff | tree | snapshot
2016-11-16 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... commit | commitdiff | tree | snapshot
2016-11-16 kiramtJAL-2282 Updated docs with information about when warni... bug/JAL-2282 commit | commitdiff | tree | snapshot
2016-11-16 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-16 tcofoegbuJAL-2322 JAL-2309 replaced references to isheadless... commit | commitdiff | tree | snapshot
2016-11-16 Jim ProcterJAL-2318 revised documentation for above PID Threshold commit | commitdiff | tree | snapshot
2016-11-16 gmungocJAL-2324 fix and tests for comparison of Float.NaN... commit | commitdiff | tree | snapshot
2016-11-16 gmungocJAL-2319 corrected reporting of SIFTS mapping commit | commitdiff | tree | snapshot
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ... commit | commitdiff | tree | snapshot
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap... commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuMerge branch 'bug/JAL-2317_jmol_chimera-chain-factorisa... commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuMerge branch 'develop' into bug/JAL-2317_jmol_chimera... commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuJAL-2317 Fixed Chimera command for hiding/showing disti... bug/JAL-2317_jmol_chimera-chain-factorisation commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2301 corrected search example to match AA propertie... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2301 made T hydrophobic as per the cited conservati... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-1961 added link to GFF3 format as well as GFF2 commit | commitdiff | tree | snapshot
2016-11-08 kiramtJAL-2309 Made test timeout slightly longer bug/JAL-2309 commit | commitdiff | tree | snapshot
2016-11-08 kiramtJAL-2309 Adjusted timeout on headless tests commit | commitdiff | tree | snapshot
2016-11-08 tcofoegbuJAL-2280 Updated spanish translation as recommended... commit | commitdiff | tree | snapshot
2016-11-08 tcofoegbuJAL-2292 updated method calls commit | commitdiff | tree | snapshot
2016-11-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-08 tcofoegbuJAL-2292 renamed method and improved implementation... commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-1270 renamed helper method so it is not run as... commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-2272 another test case commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-1805 groups=Functional added where missing commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-2272 unit tests added for Platform.isControlDown commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-2318 updated help text commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-2282 show url links that need checked; remove ... commit | commitdiff | tree | snapshot
2016-11-04 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... commit | commitdiff | tree | snapshot
2016-11-04 kiramtJAL-2315 Clear sequenceURLLinks if all sequence links... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2292 squashed bug that breaks feature mapping for... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2292 added javadoc for compareChar(..) utility... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2195 JAL-2262 house keeping commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2292 fix for wrong mapping output in sequence mappi... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2292 Wrote utility method for comparing two char... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2292 Unit test for utility method for comparing... commit | commitdiff | tree | snapshot
2016-11-04 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... commit | commitdiff | tree | snapshot
2016-11-04 kiramtJAL-2282 Better check for existing url links commit | commitdiff | tree | snapshot
2016-11-04 gmungocJAL-2272 right mouse button on Mac is not Cmd equivalent! commit | commitdiff | tree | snapshot
2016-11-04 kiramtJAL-2282 Remove Cache dependency from applet commit | commitdiff | tree | snapshot
2016-11-04 kiramtJAL-2282 Message box stays on top at Jalview open;... commit | commitdiff | tree | snapshot
2016-11-04 gmungocJAL-966 JAL-1854 removed redundant methods / modifiers... commit | commitdiff | tree | snapshot
2016-11-04 gmungocJAL-2302 unit tests added for Finder commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2282 Link menu disabled if there are no valid links commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2282 Updated warn.url_must_contain commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2282 If checkbox on warning dialog is unclicked... commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2281 Back out unit test update, as Mungo already... commit | commitdiff | tree | snapshot
2016-11-03 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2308 Fixed hiddenColsTest bug/JAL-2308 commit | commitdiff | tree | snapshot
2016-11-03 tcofoegbuJAL-2312 unit test for bug fix - repeated mapping gener... commit | commitdiff | tree | snapshot
2016-11-03 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-03 tcofoegbuJAL-2312 Bug fix for repeated mapping generation from... commit | commitdiff | tree | snapshot
2016-11-03 gmungocJAL-2310 don't double-count sequence matches; code... commit | commitdiff | tree | snapshot
2016-11-03 gmungocJAL-2281 test added to show searchRefs is now not case... commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2281 Minor unit test addition commit | commitdiff | tree | snapshot
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2281 Unit test updates commit | commitdiff | tree | snapshot
2016-11-02 Jim ProcterJAL-345 JAL-1738 menu item, AlignFrame action listener... commit | commitdiff | tree | snapshot
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... commit | commitdiff | tree | snapshot
2016-11-02 Jim ProcterJAL-1738 JAL-345 fix test - method appears to work commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-2301 table formatted, and corrected to match the... commit | commitdiff | tree | snapshot
2016-11-02 Jim ProcterJAL-1738 JAL-345 fix for JAL-2302 only report Matches... commit | commitdiff | tree | snapshot
2016-11-02 Jim ProcterJAL-1738 JAL-345 switch expected/observed in test commit | commitdiff | tree | snapshot
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