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jalview.git
2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number... commit | commitdiff | tree | snapshot
2018-05-23 Jim ProcterJAL-2999 release notes and version bump for jalview... commit | commitdiff | tree | snapshot
2018-05-23 Jim ProcterJAL-2895 replace $$Jalview-Version$$ in help.jhm with... commit | commitdiff | tree | snapshot
2018-05-21 gmungocJAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW bug/JAL-797 commit | commitdiff | tree | snapshot
2018-05-21 gmungocJAL-2920 use HGVS notation for protein variant feature commit | commitdiff | tree | snapshot
2018-05-11 gmungocJAL-2986 corrected findIndex for out of range residue... commit | commitdiff | tree | snapshot
2018-05-11 gmungocJAL-2986 additional asserts for SequenceCursor updates commit | commitdiff | tree | snapshot
2018-05-11 gmungocJAL-2986 failing test added commit | commitdiff | tree | snapshot
2018-05-10 Jim ProcterJAL-2920 release notes Release_2_10_4 commit | commitdiff | tree | snapshot
2018-05-10 Jim ProcterMerge branch 'bug/JAL-2920_uniprotvariantfeature' into... commit | commitdiff | tree | snapshot
2018-05-10 Jim ProcterJAL-2920 basic test for Description from features with... commit | commitdiff | tree | snapshot
2018-05-10 Jim ProcterJAL-2920 simplified logic and added corner cases for... commit | commitdiff | tree | snapshot
2018-05-09 Jim ProcterJAL-2906 update release date and release notes commit | commitdiff | tree | snapshot
2018-05-09 Jim ProcterJAL-2931 patch IA paths for new build box commit | commitdiff | tree | snapshot
2018-05-09 gmungocJAL-2984 add pdb as sequence(s) if associate structure... commit | commitdiff | tree | snapshot
2018-05-09 Jim ProcterMerge branch 'patch/JAL-2976_vaqua4_fallback' into... commit | commitdiff | tree | snapshot
2018-05-09 Jim ProcterJAL-2976 fixed bad equivalence check and implemented... commit | commitdiff | tree | snapshot
2018-05-08 Jim ProcterJAL-2321 release notes commit | commitdiff | tree | snapshot
2018-05-08 Jim ProcterMerge branch 'patch/JAL-2321_addsecstrForDroppedPDBFile... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 patch test to ensure structures are actually... patch/JAL-2321_addsecstrForDroppedPDBFile commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 ensure default is ‘parseImmediately=true’ commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 use configured values for structure derived... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 add secondary structure & temp factor if not... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 use StructureImportSettings singleton settings... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 isParseImmediately() allows the parse() method... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 allow JmolParser to be configured before parsi... commit | commitdiff | tree | snapshot
2018-05-07 gmungocJAL-2808 ensure test setUp/tearDown alwaysRun commit | commitdiff | tree | snapshot
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... commit | commitdiff | tree | snapshot
2018-05-07 gmungocJAL-1767 unit test for save and restore PCA features/JAL-1767pcaInProject commit | commitdiff | tree | snapshot
2018-05-07 gmungocJAL-1767 scheme DoubleMatrix type includes D and E... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2906 apply GPLv3 license source commit | commitdiff | tree | snapshot
2018-05-07 gmungocJAL-2982 use configured background colour in PCA image... commit | commitdiff | tree | snapshot
2018-05-07 gmungocJAL-1767 JAL-2647 hide 'Input Data..' for PCA loaded... commit | commitdiff | tree | snapshot
2018-05-07 gmungocJAL-1767 save PCA D and E vectors instead of 'details... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2960 don’t override a swing method and create infin... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' of source... commit | commitdiff | tree | snapshot
2018-05-04 gmungocJAL-2906 small tweaks to release notes commit | commitdiff | tree | snapshot
2018-05-04 gmungocJAL-2975 Shift-arrow keys to rotate PCA incrementally commit | commitdiff | tree | snapshot
2018-05-04 gmungocJAL-1767 schema and Castor changes for Save PCA in... commit | commitdiff | tree | snapshot
2018-05-04 gmungocJAL-2965 graduate brightness on z-axis from centre... commit | commitdiff | tree | snapshot
2018-05-04 gmungocJAL-1767 refactorings to enable faithful restore of... commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2906 2.10.4 release for 8th May 2018 commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_... commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2906 removed mention of experimental features,... commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2976 patch NPE when trying to open Uniprot FTS commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2929 JAL-2922 release notes commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2976 typo in installAnywhere build for VAqua dependency commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2960 release notes commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2948 transfer features/annotation is now available... commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2960 raise the structure view after adding structur... commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterJAL-2976 Vaqua fallback release notes JAL-2906 commit | commitdiff | tree | snapshot
2018-05-04 Jim ProcterMerge branch 'patch/JAL-2976_vaqua4_fallback' into... commit | commitdiff | tree | snapshot
2018-05-02 gmungocJAL-1767 getters/setters for D and E vectors commit | commitdiff | tree | snapshot
2018-05-02 Jim ProcterJAL-2976 fallback to Vaqua for Macs that don’t work... commit | commitdiff | tree | snapshot
2018-05-02 Jim ProcterJAL-2976 Vaqua(4) as a dependency commit | commitdiff | tree | snapshot
2018-05-01 Jim ProcterJAL-2899 release notes commit | commitdiff | tree | snapshot
2018-05-01 Jim ProcterJAL-2973 JAL-2974 known defects for 2.10.4 (JAL-2906)
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2018-05-01 Jim ProcterJAL-2925 release notes commit | commitdiff | tree | snapshot
2018-05-01 gmungocJAL-1767 include d and e vectors in Matrix.copy() commit | commitdiff | tree | snapshot
2018-05-01 Jim ProcterJAL-2593 JAL-2945 JAL-2952 JAL-2954 release notes for... commit | commitdiff | tree | snapshot
2018-05-01 Jim ProcterJAL-2223 JAL-2781 JAL-2780 JAL-2946 JAL-2906 release... commit | commitdiff | tree | snapshot
2018-05-01 Jim ProcterJAL-2906 reformat release notes commit | commitdiff | tree | snapshot
2018-05-01 Jim ProcterJAL-2906 typo commit | commitdiff | tree | snapshot
2018-05-01 Jim ProcterJAL-2944 revised docs and structure chooser screen... commit | commitdiff | tree | snapshot
2018-05-01 Jim ProcterJAL-2899 colouring moved from SwingWorker to a backgrou... commit | commitdiff | tree | snapshot
2018-04-30 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_... commit | commitdiff | tree | snapshot
2018-04-30 Jim ProcterJAL-2906 release 2.10.4 on 1st May 2018 commit | commitdiff | tree | snapshot
2018-04-30 gmungocJAL-2965 graduated sequence point colour from back... commit | commitdiff | tree | snapshot
2018-04-27 gmungocJAL-2964 tree@linkToAllViews attribute added to project... commit | commitdiff | tree | snapshot
2018-04-27 gmungocJAL-2963 correctly dim PCA points with negative z-coord... commit | commitdiff | tree | snapshot
2018-04-27 gmungocJAL-1767 refactoring and tidying of RotatableCanvas... commit | commitdiff | tree | snapshot
2018-04-26 gmungocJAL-2962 start on help updates commit | commitdiff | tree | snapshot
2018-04-26 gmungocJAL-2962 rename run method (as not a Runnable) commit | commitdiff | tree | snapshot
2018-04-26 gmungocJAL-2962 remove Change Parameters menu from PCA panel commit | commitdiff | tree | snapshot
2018-04-26 gmungocJAL-2962 option to offer BLOSUM62 for nucleotide PCA commit | commitdiff | tree | snapshot
2018-04-26 gmungocJAL-2962 code tidying/documentation (non-functional... commit | commitdiff | tree | snapshot
2018-04-25 Jim ProcterMerge branch 'features/JAL-2944_openStructuresInSelecte... commit | commitdiff | tree | snapshot
2018-04-25 gmungocJAL-1767 minor field tidying prior to functional changes commit | commitdiff | tree | snapshot
2018-04-24 gmungocJAL-2959 no Print dialog shown if Page Format is Cancelled commit | commitdiff | tree | snapshot
2018-04-23 gmungocJAL-2954 more efficient SearchResults.markColumns commit | commitdiff | tree | snapshot
2018-04-23 gmungocJAL-2952 set negative TempFactor values as AlignmentAnn... commit | commitdiff | tree | snapshot
2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... commit | commitdiff | tree | snapshot
2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency... commit | commitdiff | tree | snapshot
2018-04-13 gmungocMerge branch 'features/JAL-2944_openStructuresInSelecte... features/JAL-2944_openStructuresInSelectedView commit | commitdiff | tree | snapshot
2018-04-12 gmungocJAL-2223 don't add duplicate mappings to StructureSelec... commit | commitdiff | tree | snapshot
2018-04-12 gmungocJAL-1847 minor post-review updates commit | commitdiff | tree | snapshot
2018-04-12 gmungocJAL-2944 tidies for review comments commit | commitdiff | tree | snapshot
2018-04-11 Jim ProcterJAL-2946 catch unexpected SIFTS mapping exceptions... commit | commitdiff | tree | snapshot
2018-04-09 Jim ProcterJAL-2944 ’new view’ and ‘add to view’ button rather... commit | commitdiff | tree | snapshot
2018-04-09 Jim ProcterJAL-1847 superpose checkbox in structure chooser commit | commitdiff | tree | snapshot
2018-04-09 Jim ProcterJAL-1847 JAL-2944 make superposition step a configurabl... commit | commitdiff | tree | snapshot
2018-04-06 Jim Procterfailing test for JAL-2223 commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2945 resolve model as PDB file. Need to verify... commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2945 failing test for structure mapping commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2945 formatting commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2945 provide access to last highlighted results commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2944 open selected structures in existing or a... commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2944 combo box to pick which viewer to load structu... commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2944 methods to check existence and get a title... commit | commitdiff | tree | snapshot
2018-04-05 Jim ProcterJAL-2944 allow StructureViewer proxy to be created... commit | commitdiff | tree | snapshot
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