jalview.git
2023-07-14 Mateusz WarownyMerge branch 'feature/JAL-3954-ebi-phmmer' into mmw... mmw/JAL-4199-task-execution-update
2023-07-12 Mateusz WarownyJAL-4199 Fix cancel button not appearing on progress bar
2023-07-12 Mateusz WarownyJAL-4199 Restore deletable test when removing workers
2023-07-12 Mateusz WarownyJAL-4199 Remove viewport reference from AnnotationTask
2023-07-12 Mateusz WarownyJAL-4199 Fix slivka client to parse feature fileters
2023-07-12 Mateusz WarownyJAL-4199 remove viewport references from AlignmentTask
2023-07-12 Mateusz WarownyJAL-4199 Fix interactive jobs not being stopped
2023-07-12 Mateusz WarownyJAL-4199 Organise AlignCalcWorkerAdapter imports
2023-07-12 Mateusz WarownyJAL-4199 Implement toString in BaseTask
2023-07-12 Mateusz WarownyJAL-4199 Organise annotation task imports and fields
2023-07-12 Mateusz WarownyJAL-4199 Set initial delay of task executor to 0
2023-07-12 Mateusz WarownyJAL-4199 Remove commented out code
2023-07-12 Mateusz WarownyJAL-4199 Perform null check for annotation sequenceRef
2023-07-12 Mateusz WarownyJAL-4199 Patch task execution in action tests
2023-07-12 Mateusz WarownyJAL-4199 Remove utility methods moved to other classes...
2023-07-12 Mateusz WarownyImplement getRootDatasetSequence for SequenceI
2023-07-12 Mateusz WarownyImplement getLastGraphGroup in for AnnotatedCollectionI
2023-07-12 Mateusz WarownyJAL-4199 Schedule tasks for execution from MenuManager
2023-07-12 Mateusz WarownyJAL-4199 Tidy up imports
2023-07-12 Mateusz WarownyJAL-4199 Update gui handler for annotation tasks
2023-07-12 Mateusz WarownyJAL-4199 Implement AlignCalcWorker adapter for annot...
2023-07-12 Mateusz WarownyJAL-4199 Fix method name typo
2023-07-12 Mateusz WarownyJAL-4199 Make all TaskEventListener methods default
2023-07-12 Mateusz WarownyJAL-4199 Remove taskRestarted from task events
2023-07-12 Mateusz WarownyJAL-4199 Allow multiple listeners in TaskEventSupport
2023-07-12 Mateusz WarownyJAL-4199 Change actions to be task factories
2023-07-12 Mateusz WarownyJAL-4199 Replace AbstractPollingTask with BaseTask
2023-06-22 Mateusz WarownyJAL-4199 Introduce AlignmentAction tests
2023-06-22 Mateusz WarownyJAL-4199 Initialize jobs and tasks with status CREATED
2023-06-19 Mateusz WarownyJAL-4199 Test basic service parameter construction
2023-06-14 Mateusz WarownyJAL-4199 Test URL settings and basic service discovery
2023-06-14 Mateusz WarownyJAL-4199 Update slivka client
2023-06-02 Mateusz WarownyJAL-3954 Do not retrieve alignment for failed jobs feature/JAL-3954-ebi-phmmer
2023-06-02 Mateusz WarownyJAL-3954 Report error log when job fails
2023-06-02 Mateusz WarownyJAL-3954 Add query sequence aligned to consensus to...
2023-06-02 Mateusz WarownyJAL-3954 reuse spinner dialog to show search task status
2023-05-30 Mateusz WarownyJAL-3954 create primitive gui handler for search service
2023-05-16 Mateusz WarownyJAL-3954 Implement phmmer action and task as alignment...
2023-05-16 Mateusz WarownyJAL-3954 Log events TaskEventListener.NULL_LISTENER
2023-05-10 Mateusz WarownyJAL-3954 Create fallback for handling unknown actions
2023-05-10 Mateusz WarownyJAL-3954 Register AlignFrame as web service change...
2023-05-10 Mateusz WarownyJAL-3954 Implement job dispatcher service discoverer
2023-05-10 Mateusz WarownyJAL-3954 Implement NullAction and NullTask for testing...
2023-05-10 Mateusz WarownyJAL-3954 Fix typo in error message
2023-05-08 Mateusz WarownyJAL-3954 Update hmmer client lib, testEndpoint added
2023-05-08 Mateusz WarownyJAL-3954 Implement proxy ws client for phmmer
2023-05-08 Mateusz WarownyJAL-3954 Add client libraries for phmmer and j2s http
2023-05-08 Mateusz WarownyJAL-3954 Create getters for Credentials record
2023-05-08 Mateusz WarownyJAL-3954 Add value parsers for double, int and bool...
2023-05-08 Mateusz WarownyJAL-3954 Create ParamDatastore builder for phmmer
2023-04-24 Mateusz WarownyJAL-4155 Replace unsafe casting to AlignmentPanel with...
2023-04-24 James ProcterJAL-4155 Viewport holds a reference to its AlignmentVie...
2023-03-28 Mateusz WarownyJAL-4154 Remove not-bamboo flag from testGetVisibleWidth
2023-03-28 Mateusz WarownyJAL-4154 Update AlignmentPanelTest to use new forArch...
2023-03-28 Mateusz WarownyJAL-4154 Add Platform.forArch method.
2023-03-28 Mateusz WarownyMerge branch 'JAL-4152-typed-singleton-provider' into...
2023-03-28 Mateusz WarownyMerge branch 'development/Release_2_12_Branch' into...
2023-03-24 Mateusz WarownyJAL-4152 Remove redundant casts from getInstance usages. JAL-4152-typed-singleton-provider
2023-03-22 Mateusz WarownyJAL-4152 Make return type of getInstance a generic...
2023-03-17 Mateusz WarownyJAL-4146 Fix SeqCanvasTest setup
2023-03-15 Mateusz WarownyJAL-4146 Change occurrences of <br/> to <br>
2023-03-14 Mateusz WarownyJAL-4146 Patch parseColourString test to expect null...
2023-03-01 Mateusz WarownyJAL-4136 Replace uses of isBlank with isEmpty
2023-02-24 Mateusz WarownyJAL-4135 replace stream.toString(Charset) calls with...
2023-02-22 Mateusz WarownyJAL-4130 Replace Collection#forEach call with for loop
2023-02-22 Mateusz WarownyJAL-4130 Avoid using thenComparing of the Comparator...
2023-02-17 Mateusz WarownyJAL-4131 Replace usages of requireNonNullElse
2023-02-16 Mateusz WarownyJAL-4130 Workaround the j2s issue with final variables...
2023-02-06 Mateusz WarownyJAL-3878 Change Cache.log calls to Console
2023-02-06 Mateusz WarownyMerge branch 'JAL-3878_ws-overhaul-3' into mmw/Release_...
2023-01-20 Jim ProcterMerge branch 'develop' into development/Release_2_12_Br...
2023-01-20 Jim ProcterMerge branch 'patch/JAL-4114_updated_3dbeacons_api...
2023-01-20 Jim ProcterJAL-4114 model_page_url not required in v2.0 response patch/JAL-4114_updated_3dbeacons_api
2023-01-20 Jim ProcterJAL-4102 update 2.12 from 2.11.2.6 patch release -...
2023-01-20 Jim ProcterJAL-4102 update date and release notes for 2.11.2.6
2023-01-20 Jim ProcterMerge branch 'patch/JAL-4114_updated_3dbeacons_api...
2023-01-20 Jim ProcterMerge branch 'patch/Release_2_11_2_6_Branch' into develop
2023-01-20 Jim ProcterJAL-2353 primary ref candidates that should be promoted... patch/Release_2_11_2_6_Branch
2023-01-20 Jim ProcterJAL-4114 missing mock server response
2023-01-20 Jim ProcterJAL-4114 only rank model qualities that are computed...
2023-01-20 Jim ProcterJAL-4114 alphafold now marked as AB-INITIO so adjust...
2023-01-20 Jim ProcterJAL-4114 additional warnings when PDBe doesn’t return...
2023-01-20 Jim ProcterJAL-4114 patch REST client for changed JSON schema...
2023-01-20 Jim ProcterJAL-4114 formatting
2023-01-20 Jim ProcterJAL-4114 updated mock tests and responses for v2.0 api
2023-01-06 Jim ProcterMerge branch 'improvement/JAL-4111_suffixed_DEVELOP_cha...
2023-01-06 Ben SoaresJAL-4111 Added commit and date text to splashscreens...
2023-01-05 Ben SoaresJAL-4111 improvement to convert -draw argument
2023-01-05 Ben SoaresJAL-4111 Use ImageMagick to add commit and build time...
2023-01-05 Ben SoaresJAL-4111 Fixed channel.props to allow replacement of...
2023-01-05 Benedict Soares... JAL-4111 fixed DMG background image for generic Develop...
2022-12-22 Ben SoaresJAL-4111 Allow -PCHANNEL=DEVELOP-version for new appbas...
2022-12-21 Jim ProcterJAL-3362 update release to 2.12 alpha/JAL-3362_Jalview_212_alpha
2022-12-16 Jim ProcterJAL-4110 added line to build.gradle that allows stdout... update/JAL-4108_212_testng_jar_update
2022-12-16 Jim ProcterJAL-4109 examine -Djalview.loglevel on startup to decid...
2022-12-16 Jim ProcterJAL-4107 JAL-4108 updated testNG and other test depende...
2022-12-16 Jim ProcterJAL-4107 patching tests after merge spike/jims_dec_2022_212_merge
2022-12-16 Jim ProcterJAL-4107 fix merge and avoid NPE
2022-12-16 Jim ProcterJAL-4107 remove old jMol jar
2022-12-14 Jim ProcterJAL-4107 fix test compilation issues
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