source.jalview.org Git - jalview.git/shortlog

git://source.jalview.org / jalview.git / shortlog

2006-08-22	amwaterhouse	add link.gif Release_2_1	commit \| commitdiff \| tree \| snapshot
2006-08-22	amwaterhouse	2.1 update	commit \| commitdiff \| tree \| snapshot
2006-08-22	amwaterhouse	To uppercase only visible	commit \| commitdiff \| tree \| snapshot
2006-08-22	jprocter	documentation - adding new Input data menu entries.	commit \| commitdiff \| tree \| snapshot
2006-08-22	jprocter	added note on column-separability	commit \| commitdiff \| tree \| snapshot
2006-08-22	jprocter	documentation	commit \| commitdiff \| tree \| snapshot
2006-08-22	jprocter	getSequenceStrings() bug fixed.	commit \| commitdiff \| tree \| snapshot
2006-08-22	amwaterhouse	Remove group when hiding cols from scalePanel	commit \| commitdiff \| tree \| snapshot
2006-08-22	amwaterhouse	2006	commit \| commitdiff \| tree \| snapshot
2006-08-22	amwaterhouse	Put transparency back	commit \| commitdiff \| tree \| snapshot
2006-08-22	amwaterhouse	make 1.1 compatible	commit \| commitdiff \| tree \| snapshot
2006-08-22	jprocter	hidden region recovery in JPred and new hidden region...	commit \| commitdiff \| tree \| snapshot
2006-08-22	jprocter	off by one bug in hiden column unmarshalling	commit \| commitdiff \| tree \| snapshot
2006-08-21	amwaterhouse	header updated	commit \| commitdiff \| tree \| snapshot
2006-08-21	amwaterhouse	header updated	commit \| commitdiff \| tree \| snapshot
2006-08-21	amwaterhouse	validate groupPanel	commit \| commitdiff \| tree \| snapshot
2006-08-21	amwaterhouse	validate groupPanel	commit \| commitdiff \| tree \| snapshot
2006-08-21	amwaterhouse	Add uniprot DBref	commit \| commitdiff \| tree \| snapshot
2006-08-21	amwaterhouse	Remove system.out	commit \| commitdiff \| tree \| snapshot
2006-08-21	amwaterhouse	1.1 compatible	commit \| commitdiff \| tree \| snapshot
2006-08-21	jprocter	Refactored Jnet and added hidden columns support.	commit \| commitdiff \| tree \| snapshot
2006-08-21	jprocter	fixed undo-redo bug, hidden columns are moved with...	commit \| commitdiff \| tree \| snapshot
2006-08-21	jprocter	removeGaps method can record changes in alignment colum...	commit \| commitdiff \| tree \| snapshot
2006-08-21	jprocter	fix for truncation of sequence associated annotation...	commit \| commitdiff \| tree \| snapshot
2006-08-21	jprocter	added shiftList to record changes in alignment column...	commit \| commitdiff \| tree \| snapshot
2006-08-21	jprocter	remove gaps method from AlignFrame.remove_gaps_actionPe...	commit \| commitdiff \| tree \| snapshot
2006-08-21	jprocter	inverse ShiftList and SequenceI.gapMap->ShiftList methods.	commit \| commitdiff \| tree \| snapshot
2006-08-21	jprocter	avoid null pointer exceptions	commit \| commitdiff \| tree \| snapshot
2006-08-20	jprocter	javadoc	commit \| commitdiff \| tree \| snapshot
2006-08-18	amwaterhouse	Check colourScheme is not null - jalview prior 2.5...	commit \| commitdiff \| tree \| snapshot
2006-08-18	amwaterhouse	dont remove all representative seqs on delete groups	commit \| commitdiff \| tree \| snapshot
2006-08-18	amwaterhouse	remove all representative seqs on delete groups	commit \| commitdiff \| tree \| snapshot
2006-08-18	amwaterhouse	treeFile = treeFile	commit \| commitdiff \| tree \| snapshot
2006-08-18	amwaterhouse	Only discover DAS sources if panel shown	commit \| commitdiff \| tree \| snapshot
2006-08-18	amwaterhouse	only set new layout if 2 buttons visible	commit \| commitdiff \| tree \| snapshot
2006-08-18	amwaterhouse	Jalview features format adds links as hrefs	commit \| commitdiff \| tree \| snapshot
2006-08-17	amwaterhouse	H key updates	commit \| commitdiff \| tree \| snapshot
2006-08-17	amwaterhouse	OptionPane invokeLater	commit \| commitdiff \| tree \| snapshot
2006-08-17	amwaterhouse	If no annotation exists	commit \| commitdiff \| tree \| snapshot
2006-08-17	amwaterhouse	Set bg white	commit \| commitdiff \| tree \| snapshot
2006-08-17	amwaterhouse	Hold onto selected region when hiding all columns only	commit \| commitdiff \| tree \| snapshot
2006-08-17	jprocter	moved visible sub-alignment extraction and update from...	commit \| commitdiff \| tree \| snapshot
2006-08-17	jprocter	javadoc	commit \| commitdiff \| tree \| snapshot
2006-08-17	amwaterhouse	Monospace check	commit \| commitdiff \| tree \| snapshot
2006-08-17	amwaterhouse	1 more pixel allowed between chars and graph	commit \| commitdiff \| tree \| snapshot
2006-08-17	amwaterhouse	Keys update	commit \| commitdiff \| tree \| snapshot
2006-08-17	amwaterhouse	control and shift	commit \| commitdiff \| tree \| snapshot
2006-08-17	amwaterhouse	Dont set group null hideCOls	commit \| commitdiff \| tree \| snapshot
2006-08-17	amwaterhouse	OptionPanes invokeLater	commit \| commitdiff \| tree \| snapshot
2006-08-17	amwaterhouse	Control and alt for toggle hide	commit \| commitdiff \| tree \| snapshot
2006-08-16	amwaterhouse	Fire alignment changed if seqs hidden / revealed	commit \| commitdiff \| tree \| snapshot
2006-08-15	amwaterhouse	Correct title for sequence parameter applets	commit \| commitdiff \| tree \| snapshot
2006-08-15	amwaterhouse	Sequences can be added as parameter	commit \| commitdiff \| tree \| snapshot
2006-08-15	amwaterhouse	H key added	commit \| commitdiff \| tree \| snapshot
2006-08-15	jprocter	make annotation label font size follow alignment font...	commit \| commitdiff \| tree \| snapshot
2006-08-15	jprocter	first stage of adapting JNet client to hidden regions...	commit \| commitdiff \| tree \| snapshot
2006-08-15	jprocter	fixed alignment ordering name.	commit \| commitdiff \| tree \| snapshot
2006-08-15	jprocter	ensure that close widget is available for jobs that...	commit \| commitdiff \| tree \| snapshot
2006-08-15	amwaterhouse	Acknowledgement	commit \| commitdiff \| tree \| snapshot
2006-08-15	amwaterhouse	Setselectiongroup null on hide	commit \| commitdiff \| tree \| snapshot
2006-08-15	amwaterhouse	H key to hide / reveal	commit \| commitdiff \| tree \| snapshot
2006-08-15	amwaterhouse	Add key listener to scalePanel and annotationPanel	commit \| commitdiff \| tree \| snapshot
2006-08-15	amwaterhouse	Select revealed seqs	commit \| commitdiff \| tree \| snapshot
2006-08-15	amwaterhouse	WRITEABLE_FORMATS and READABLE_FORMATS string []	commit \| commitdiff \| tree \| snapshot
2006-08-15	amwaterhouse	Move features to dataset	commit \| commitdiff \| tree \| snapshot
2006-08-14	amwaterhouse	Stockholm parser added	commit \| commitdiff \| tree \| snapshot
2006-08-14	amwaterhouse	Stockholm parser	commit \| commitdiff \| tree \| snapshot
2006-08-14	jprocter	refactored to create generic polling thread and subjobs	commit \| commitdiff \| tree \| snapshot
2006-08-14	amwaterhouse	2.1 updates	commit \| commitdiff \| tree \| snapshot
2006-08-14	jprocter	function to indicate job has finished but no results...	commit \| commitdiff \| tree \| snapshot
2006-08-14	amwaterhouse	New file	commit \| commitdiff \| tree \| snapshot
2006-08-14	amwaterhouse	new feature added	commit \| commitdiff \| tree \| snapshot
2006-08-14	amwaterhouse	Stop loading must be before JOptionPane, 1.5 bug	commit \| commitdiff \| tree \| snapshot
2006-08-14	amwaterhouse	No need to check selection group size	commit \| commitdiff \| tree \| snapshot
2006-08-14	amwaterhouse	findSequenceMatch returns multiple sequences	commit \| commitdiff \| tree \| snapshot
2006-08-14	amwaterhouse	Do a loop for multiple seq matches	commit \| commitdiff \| tree \| snapshot
2006-08-14	amwaterhouse	Correct test string	commit \| commitdiff \| tree \| snapshot
2006-08-14	jprocter	multiple subjobs can be cancelled and gui only allows...	commit \| commitdiff \| tree \| snapshot
2006-08-14	jprocter	fixed off by one bug in end sequence from getSubSequenc...	commit \| commitdiff \| tree \| snapshot
2006-08-14	amwaterhouse	findingFeatures flag set	commit \| commitdiff \| tree \| snapshot
2006-08-14	amwaterhouse	2.1 updates	commit \| commitdiff \| tree \| snapshot
2006-08-14	amwaterhouse	2.1 updates	commit \| commitdiff \| tree \| snapshot
2006-08-14	amwaterhouse	2.1 new files	commit \| commitdiff \| tree \| snapshot
2006-08-14	amwaterhouse	Replaced image	commit \| commitdiff \| tree \| snapshot
2006-08-14	amwaterhouse	Merged with edit	commit \| commitdiff \| tree \| snapshot
2006-08-14	jprocter	end<start for empty sequences in Sequence[] from SeqCigar[]	commit \| commitdiff \| tree \| snapshot
2006-08-14	amwaterhouse	elementAt instead of get for 1.1 compatibility	commit \| commitdiff \| tree \| snapshot
2006-08-14	jprocter	fixing residue clip bug in MsaWSThread and adding minim...	commit \| commitdiff \| tree \| snapshot
2006-08-13	jprocter	fixed end-residue bug and subjob panel names bug	commit \| commitdiff \| tree \| snapshot
2006-08-11	jprocter	multiple web service jobs from visible blocks of an...	commit \| commitdiff \| tree \| snapshot
2006-08-11	amwaterhouse	Update overview on conservation/pid slider mouseRelease	commit \| commitdiff \| tree \| snapshot
2006-08-11	amwaterhouse	alignpanel.repaint	commit \| commitdiff \| tree \| snapshot
2006-08-11	amwaterhouse	Add links menu if no sequence is selected	commit \| commitdiff \| tree \| snapshot
2006-08-11	amwaterhouse	popup must be added to panel before showing	commit \| commitdiff \| tree \| snapshot
2006-08-11	amwaterhouse	param tree replaces treeFile	commit \| commitdiff \| tree \| snapshot
2006-08-11	amwaterhouse	2.1 updates	commit \| commitdiff \| tree \| snapshot
2006-08-11	amwaterhouse	2.1 updates	commit \| commitdiff \| tree \| snapshot
2006-08-11	amwaterhouse	2.1 updates	commit \| commitdiff \| tree \| snapshot
2006-08-11	amwaterhouse	2.1 updates	commit \| commitdiff \| tree \| snapshot
2006-08-11	amwaterhouse	2.1 updates	commit \| commitdiff \| tree \| snapshot
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