source.jalview.org Git - jalview.git/tree

drwxr-xr-x		..
-rw-r--r--	284	.cvsignore	blob \| history \| raw
-rw-r--r--	3080	AlignExportSettings.java	blob \| history \| raw
-rw-r--r--	165032	AlignFrame.java	blob \| history \| raw
-rw-r--r--	29445	AlignViewport.java	blob \| history \| raw
-rw-r--r--	49678	AlignmentPanel.java	blob \| history \| raw
-rw-r--r--	18588	AnnotationChooser.java	blob \| history \| raw
-rw-r--r--	13848	AnnotationColourChooser.java	blob \| history \| raw
-rw-r--r--	24561	AnnotationColumnChooser.java	blob \| history \| raw
-rw-r--r--	8925	AnnotationExporter.java	blob \| history \| raw
-rwxr-xr-x	35549	AnnotationLabels.java	blob \| history \| raw
-rwxr-xr-x	31314	AnnotationPanel.java	blob \| history \| raw
-rw-r--r--	12858	AnnotationRowFilter.java	blob \| history \| raw
-rw-r--r--	19806	AppJmol.java	blob \| history \| raw
-rw-r--r--	5237	AppJmolBinding.java	blob \| history \| raw
-rw-r--r--	20079	AppVarna.java	blob \| history \| raw
-rw-r--r--	13976	AppVarnaBinding.java	blob \| history \| raw
-rw-r--r--	7095	AquaInternalFrameManager.java	blob \| history \| raw
-rw-r--r--	2788	AssociatePdbFileWithSeq.java	blob \| history \| raw
-rw-r--r--	23283	BlogReader.java	blob \| history \| raw
-rw-r--r--	17406	CalculationChooser.java	blob \| history \| raw
-rw-r--r--	23174	ChimeraViewFrame.java	blob \| history \| raw
-rw-r--r--	10121	ColourMenuHelper.java	blob \| history \| raw
-rw-r--r--	1871	ComboBoxTooltipRenderer.java	blob \| history \| raw
-rw-r--r--	17222	Console.java	blob \| history \| raw
-rw-r--r--	10533	CrossRefAction.java	blob \| history \| raw
-rw-r--r--	6132	CutAndPasteHtmlTransfer.java	blob \| history \| raw
-rw-r--r--	10820	CutAndPasteTransfer.java	blob \| history \| raw
-rw-r--r--	23224	DasSourceBrowser.java	blob \| history \| raw
-rw-r--r--	101192	Desktop.java	blob \| history \| raw
-rw-r--r--	4256	EPSOptions.java	blob \| history \| raw
-rw-r--r--	2811	EditNameDialog.java	blob \| history \| raw
-rw-r--r--	17627	FeatureColourChooser.java	blob \| history \| raw
-rw-r--r--	18158	FeatureRenderer.java	blob \| history \| raw
-rw-r--r--	53292	FeatureSettings.java	blob \| history \| raw
-rwxr-xr-x	11145	Finder.java	blob \| history \| raw
-rwxr-xr-x	11954	FontChooser.java	blob \| history \| raw
-rw-r--r--	4217	HTMLOptions.java	blob \| history \| raw
-rw-r--r--	2770	Help.java	blob \| history \| raw
-rw-r--r--	1795	IProgressIndicator.java	blob \| history \| raw
-rw-r--r--	1218	IProgressIndicatorHandler.java	blob \| history \| raw
-rwxr-xr-x	15432	IdCanvas.java	blob \| history \| raw
-rwxr-xr-x	12539	IdPanel.java	blob \| history \| raw
-rwxr-xr-x	3875	IdwidthAdjuster.java	blob \| history \| raw
-rw-r--r--	15841	JDatabaseTree.java	blob \| history \| raw
-rw-r--r--	174109	Jalview2XML.java	blob \| history \| raw
-rwxr-xr-x	15677	Jalview2XML_V1.java	blob \| history \| raw
-rw-r--r--	1940	JalviewAppender.java	blob \| history \| raw
-rw-r--r--	2992	JalviewChangeSupport.java	blob \| history \| raw
-rw-r--r--	3626	JalviewChimeraBindingModel.java	blob \| history \| raw
-rw-r--r--	4442	JalviewDialog.java	blob \| history \| raw
-rw-r--r--	9976	JvOptionPane.java	blob \| history \| raw
-rw-r--r--	8421	JvSwingUtils.java	blob \| history \| raw
-rw-r--r--	2891	MenuChooser.java	blob \| history \| raw
-rw-r--r--	2575	OOMWarning.java	blob \| history \| raw
-rw-r--r--	24077	OptsAndParamsPage.java	blob \| history \| raw
-rw-r--r--	1023	OptsParametersContainerI.java	blob \| history \| raw
-rw-r--r--	7593	OverviewCanvas.java	blob \| history \| raw
-rwxr-xr-x	11532	OverviewPanel.java	blob \| history \| raw
-rw-r--r--	21550	PCAPanel.java	blob \| history \| raw
-rwxr-xr-x	6129	PaintRefresher.java	blob \| history \| raw
-rwxr-xr-x	5237	PairwiseAlignPanel.java	blob \| history \| raw
-rw-r--r--	58741	PopupMenu.java	blob \| history \| raw
-rwxr-xr-x	42996	Preferences.java	blob \| history \| raw
-rw-r--r--	7324	ProgressBar.java	blob \| history \| raw
-rw-r--r--	4442	ProgressPanel.java	blob \| history \| raw
-rw-r--r--	6109	PromptUserConfig.java	blob \| history \| raw
-rwxr-xr-x	7703	RedundancyPanel.java	blob \| history \| raw
-rw-r--r--	7630	RestInputParamEditDialog.java	blob \| history \| raw
-rw-r--r--	15515	RestServiceEditorPane.java	blob \| history \| raw
-rwxr-xr-x	17509	RotatableCanvas.java	blob \| history \| raw
-rw-r--r--	4211	SVGOptions.java	blob \| history \| raw
-rwxr-xr-x	14595	ScalePanel.java	blob \| history \| raw
-rwxr-xr-x	61499	SeqCanvas.java	blob \| history \| raw
-rw-r--r--	58288	SeqPanel.java	blob \| history \| raw
-rwxr-xr-x	31391	SequenceFetcher.java	blob \| history \| raw
-rwxr-xr-x	13958	SequenceRenderer.java	blob \| history \| raw
-rwxr-xr-x	12027	SliderPanel.java	blob \| history \| raw
-rwxr-xr-x	9308	SplashScreen.java	blob \| history \| raw
-rw-r--r--	23739	SplitFrame.java	blob \| history \| raw
-rw-r--r--	42431	StructureChooser.java	blob \| history \| raw
-rw-r--r--	10388	StructureViewer.java	blob \| history \| raw
-rw-r--r--	27248	StructureViewerBase.java	blob \| history \| raw
-rw-r--r--	7698	TextColourChooser.java	blob \| history \| raw
-rwxr-xr-x	26710	TreeCanvas.java	blob \| history \| raw
-rwxr-xr-x	23124	TreePanel.java	blob \| history \| raw
-rwxr-xr-x	25398	UserDefinedColours.java	blob \| history \| raw
-rw-r--r--	5195	UserQuestionnaireCheck.java	blob \| history \| raw
-rw-r--r--	35300	VamsasApplication.java	blob \| history \| raw
-rw-r--r--	8153	ViewSelectionMenu.java	blob \| history \| raw
-rw-r--r--	22178	WebserviceInfo.java	blob \| history \| raw
-rw-r--r--	43554	WsJobParameters.java	blob \| history \| raw
-rw-r--r--	9717	WsParamSetManager.java	blob \| history \| raw
-rw-r--r--	17311	WsPreferences.java	blob \| history \| raw