source.jalview.org Git - jalview.git/tree

drwxr-xr-x		..
-rw-r--r--	2972	AMSAFile.java	blob \| history \| raw
-rwxr-xr-x	11424	AlignFile.java	blob \| history \| raw
-rw-r--r--	1452	AlignmentFileReaderI.java	blob \| history \| raw
-rw-r--r--	1403	AlignmentFileWriterI.java	blob \| history \| raw
-rw-r--r--	4133	AlignmentProperties.java	blob \| history \| raw
-rwxr-xr-x	51506	AnnotationFile.java	blob \| history \| raw
-rwxr-xr-x	20245	AppletFormatAdapter.java	blob \| history \| raw
-rwxr-xr-x	6217	BLCFile.java	blob \| history \| raw
-rw-r--r--	1849	BackupFilenameFilter.java	blob \| history \| raw
-rw-r--r--	5228	BackupFilenameParts.java	blob \| history \| raw
-rw-r--r--	34432	BackupFiles.java	blob \| history \| raw
-rw-r--r--	6281	BackupFilesPresetEntry.java	blob \| history \| raw
-rw-r--r--	8108	BioJsHTMLOutput.java	blob \| history \| raw
-rwxr-xr-x	6712	ClustalFile.java	blob \| history \| raw
-rw-r--r--	1463	DBRefFile.java	blob \| history \| raw
-rw-r--r--	1109	DataSourceType.java	blob \| history \| raw
-rw-r--r--	24769	EMBLLikeFlatFile.java	blob \| history \| raw
-rw-r--r--	5859	EmblFlatFile.java	blob \| history \| raw
-rwxr-xr-x	5197	FastaFile.java	blob \| history \| raw
-rwxr-xr-x	44273	FeaturesFile.java	blob \| history \| raw
-rw-r--r--	10966	FileFormat.java	blob \| history \| raw
-rw-r--r--	1039	FileFormatException.java	blob \| history \| raw
-rw-r--r--	2443	FileFormatI.java	blob \| history \| raw
-rw-r--r--	5033	FileFormats.java	blob \| history \| raw
-rwxr-xr-x	21524	FileLoader.java	blob \| history \| raw
-rwxr-xr-x	21358	FileParse.java	blob \| history \| raw
-rwxr-xr-x	8804	FormatAdapter.java	blob \| history \| raw
-rw-r--r--	5088	GenBankFile.java	blob \| history \| raw
-rw-r--r--	11344	HTMLOutput.java	blob \| history \| raw
-rw-r--r--	5031	HtmlFile.java	blob \| history \| raw
-rw-r--r--	12816	HtmlSvgOutput.java	blob \| history \| raw
-rwxr-xr-x	14159	IdentifyFile.java	blob \| history \| raw
-rw-r--r--	1503	InputStreamParser.java	blob \| history \| raw
-rw-r--r--	1127	IntKeyStringValueEntry.java	blob \| history \| raw
-rwxr-xr-x	11876	JPredFile.java	blob \| history \| raw
-rw-r--r--	28954	JSONFile.java	blob \| history \| raw
-rwxr-xr-x	21324	JalviewFileChooser.java	blob \| history \| raw
-rwxr-xr-x	4846	JalviewFileFilter.java	blob \| history \| raw
-rwxr-xr-x	4564	JalviewFileView.java	blob \| history \| raw
-rwxr-xr-x	8514	JnetAnnotationMaker.java	blob \| history \| raw
-rwxr-xr-x	9608	MSFfile.java	blob \| history \| raw
-rwxr-xr-x	10368	ModellerDescription.java	blob \| history \| raw
-rwxr-xr-x	27331	NewickFile.java	blob \| history \| raw
-rw-r--r--	4070	PContactPredictionFile.java	blob \| history \| raw
-rw-r--r--	2214	PDBFeatureSettings.java	blob \| history \| raw
-rwxr-xr-x	5076	PIRFile.java	blob \| history \| raw
-rwxr-xr-x	4397	PfamFile.java	blob \| history \| raw
-rw-r--r--	9320	PhylipFile.java	blob \| history \| raw
-rwxr-xr-x	4406	PileUpfile.java	blob \| history \| raw
-rw-r--r--	6851	RnamlFile.java	blob \| history \| raw
-rw-r--r--	12501	ScoreMatrixFile.java	blob \| history \| raw
-rw-r--r--	17668	SequenceAnnotationReport.java	blob \| history \| raw
-rw-r--r--	8827	SimpleBlastFile.java	blob \| history \| raw
-rw-r--r--	41123	StockholmFile.java	blob \| history \| raw
-rw-r--r--	14207	StructureFile.java	blob \| history \| raw
-rw-r--r--	17464	TCoffeeScoreFile.java	blob \| history \| raw
-rw-r--r--	93637	VamsasAppDatastore.java	blob \| history \| raw
-rwxr-xr-x	8401	WSWUBlastClient.java	blob \| history \| raw
drwxr-xr-x	-	cache	tree \| history
drwxr-xr-x	-	exceptions	tree \| history
drwxr-xr-x	-	gff	tree \| history
drwxr-xr-x	-	packed	tree \| history
drwxr-xr-x	-	vamsas	tree \| history
drwxr-xr-x	-	vcf	tree \| history