1 Clazz.declarePackage ("jalview.appletgui");
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2 Clazz.load (["awt2swing.Panel", "jalview.appletgui.AnnotationRowFilter", "$.TitledPanel", "java.awt.event.ActionListener", "$.AdjustmentListener", "$.ItemListener", "$.MouseListener", "awt2swing.Checkbox", "$.Choice", "$.TextField", "java.awt.BorderLayout", "$.CardLayout"], "jalview.appletgui.AnnotationColumnChooser", ["awt2swing.Frame", "jalview.bin.JalviewLite", "jalview.datamodel.ColumnSelection", "$.GraphLine", "jalview.util.MessageManager", "jalview.viewmodel.annotationfilter.AnnotationFilterParameter", "java.awt.Color", "$.Dimension", "java.awt.event.MouseAdapter", "$.TextListener", "java.lang.Float", "java.util.Vector", "javax.swing.JPanel"], function () {
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3 c$ = Clazz.decorateAsClass (function () {
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4 this.annotations = null;
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5 this.actionPanel = null;
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6 this.thresholdPanel = null;
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7 this.switchableViewsPanel = null;
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8 this.switchableViewsLayout = null;
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9 this.noGraphFilterView = null;
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10 this.graphFilterView = null;
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11 this.annotationComboBoxPanel = null;
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12 this.borderLayout1 = null;
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13 this.gBorderLayout = null;
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14 this.ngBorderLayout = null;
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15 this.threshold = null;
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16 this.gStructureFilterPanel = null;
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17 this.ngStructureFilterPanel = null;
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18 this.currentStructureFilterPanel = null;
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19 this.currentSearchPanel = null;
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20 this.gSearchPanel = null;
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21 this.ngSearchPanel = null;
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22 this.currentFurtherActionPanel = null;
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23 this.gFurtherActionPanel = null;
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24 this.ngFurtherActionPanel = null;
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25 this.actionOption = 1;
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26 this.oldColumnSelection = null;
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27 if (!Clazz.isClassDefined ("jalview.appletgui.AnnotationColumnChooser.FurtherActionPanel")) {
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28 jalview.appletgui.AnnotationColumnChooser.$AnnotationColumnChooser$FurtherActionPanel$ ();
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30 if (!Clazz.isClassDefined ("jalview.appletgui.AnnotationColumnChooser.StructureFilterPanel")) {
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31 jalview.appletgui.AnnotationColumnChooser.$AnnotationColumnChooser$StructureFilterPanel$ ();
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33 if (!Clazz.isClassDefined ("jalview.appletgui.AnnotationColumnChooser.SearchPanel")) {
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34 jalview.appletgui.AnnotationColumnChooser.$AnnotationColumnChooser$SearchPanel$ ();
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36 Clazz.instantialize (this, arguments);
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37 }, jalview.appletgui, "AnnotationColumnChooser", jalview.appletgui.AnnotationRowFilter, [java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.ItemListener, java.awt.event.MouseListener]);
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38 Clazz.prepareFields (c$, function () {
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39 this.annotations = new awt2swing.Choice ();
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40 this.actionPanel = new awt2swing.Panel ();
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41 this.thresholdPanel = new jalview.appletgui.TitledPanel ();
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42 this.switchableViewsPanel = new awt2swing.Panel ( new java.awt.CardLayout ());
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43 this.switchableViewsLayout = (this.switchableViewsPanel.getLayout ());
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44 this.noGraphFilterView = new awt2swing.Panel ();
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45 this.graphFilterView = new awt2swing.Panel ();
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46 this.annotationComboBoxPanel = new awt2swing.Panel ();
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47 this.borderLayout1 = new java.awt.BorderLayout ();
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48 this.gBorderLayout = new java.awt.BorderLayout ();
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49 this.ngBorderLayout = new java.awt.BorderLayout ();
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50 this.threshold = new awt2swing.Choice ();
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52 Clazz.makeConstructor (c$,
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54 Clazz.superConstructor (this, jalview.appletgui.AnnotationColumnChooser, []);
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58 if (Clazz.exceptionOf (ex, Exception)) {
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59 ex.printStackTrace ();
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65 Clazz.makeConstructor (c$,
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67 Clazz.superConstructor (this, jalview.appletgui.AnnotationColumnChooser, [av, ap]);
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68 this.frame = new awt2swing.Frame ();
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69 this.frame.add (this);
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70 jalview.bin.JalviewLite.addFrame (this.frame, jalview.util.MessageManager.getString ("label.select_by_annotation"), 520, 215);
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71 this.slider.addAdjustmentListener (this);
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72 this.slider.addMouseListener (this);
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73 if (av.getAlignment ().getAlignmentAnnotation () == null) {
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75 }this.setOldColumnSelection (av.getColumnSelection ());
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76 this.adjusting = true;
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77 var list = new java.util.Vector ();
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79 for (var i = 0; i < av.getAlignment ().getAlignmentAnnotation ().length; i++) {
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80 var label = av.getAlignment ().getAlignmentAnnotation ()[i].label;
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81 if (!list.contains (label)) {
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82 list.addElement (label);
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84 list.addElement (label + "_" + (index++));
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86 for (var i = 0; i < list.size (); i++) {
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87 this.annotations.addItem (list.elementAt (i).toString ());
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89 this.populateThresholdComboBox (this.threshold);
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90 if (av.getAnnotationColumnSelectionState () != null) {
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91 this.currentSearchPanel = av.getAnnotationColumnSelectionState ().getCurrentSearchPanel ();
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92 this.currentStructureFilterPanel = av.getAnnotationColumnSelectionState ().getCurrentStructureFilterPanel ();
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93 this.annotations.select (new Integer (av.getAnnotationColumnSelectionState ().getAnnotations ().getSelectedIndex ()));
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94 this.threshold.select (new Integer (av.getAnnotationColumnSelectionState ().getThreshold ().getSelectedIndex ()));
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95 this.actionOption = av.getAnnotationColumnSelectionState ().getActionOption ();
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99 if (Clazz.exceptionOf (ex, Exception)) {
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104 this.adjusting = false;
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105 this.updateView ();
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106 this.frame.invalidate ();
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107 this.frame.pack ();
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108 }, "jalview.appletgui.AlignViewport,jalview.appletgui.AlignmentPanel");
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109 Clazz.defineMethod (c$, "jbInit",
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110 ($fz = function () {
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111 this.ok.setLabel (jalview.util.MessageManager.getString ("action.ok"));
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112 this.cancel.setLabel (jalview.util.MessageManager.getString ("action.cancel"));
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113 this.thresholdValue.setEnabled (false);
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114 this.thresholdValue.setColumns (7);
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115 this.ok.addActionListener (this);
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116 this.cancel.addActionListener (this);
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117 this.annotations.addItemListener (this);
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118 this.thresholdValue.addActionListener (this);
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119 this.threshold.addItemListener (this);
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120 this.slider.setBackground (java.awt.Color.white);
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121 this.slider.setEnabled (false);
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122 this.slider.setPreferredSize ( new java.awt.Dimension (100, 32));
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123 this.thresholdPanel.setBackground (java.awt.Color.white);
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124 this.actionPanel.setBackground (java.awt.Color.white);
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125 this.graphFilterView.setLayout (this.gBorderLayout);
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126 this.graphFilterView.setBackground (java.awt.Color.white);
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127 this.noGraphFilterView.setLayout (this.ngBorderLayout);
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128 this.noGraphFilterView.setBackground (java.awt.Color.white);
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129 this.annotationComboBoxPanel.setBackground (java.awt.Color.white);
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130 this.gSearchPanel = Clazz.innerTypeInstance (jalview.appletgui.AnnotationColumnChooser.SearchPanel, this, null, this);
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131 this.ngSearchPanel = Clazz.innerTypeInstance (jalview.appletgui.AnnotationColumnChooser.SearchPanel, this, null, this);
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132 this.gFurtherActionPanel = Clazz.innerTypeInstance (jalview.appletgui.AnnotationColumnChooser.FurtherActionPanel, this, null, this);
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133 this.ngFurtherActionPanel = Clazz.innerTypeInstance (jalview.appletgui.AnnotationColumnChooser.FurtherActionPanel, this, null, this);
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134 this.gStructureFilterPanel = Clazz.innerTypeInstance (jalview.appletgui.AnnotationColumnChooser.StructureFilterPanel, this, null, this);
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135 this.ngStructureFilterPanel = Clazz.innerTypeInstance (jalview.appletgui.AnnotationColumnChooser.StructureFilterPanel, this, null, this);
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136 this.thresholdPanel.setTitle ("Threshold Filter");
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137 this.thresholdPanel.add (this.getThreshold ());
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138 this.thresholdPanel.add (this.slider);
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139 this.thresholdPanel.add (this.thresholdValue);
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140 this.actionPanel.add (this.ok);
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141 this.actionPanel.add (this.cancel);
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142 var staticPanel = new javax.swing.JPanel ();
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143 staticPanel.setLayout ( new java.awt.BorderLayout ());
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144 staticPanel.setBackground (java.awt.Color.white);
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145 staticPanel.add (this.gSearchPanel, "North");
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146 staticPanel.add (this.gStructureFilterPanel, "South");
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147 this.graphFilterView.add (staticPanel, "North");
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148 this.graphFilterView.add (this.thresholdPanel, "Center");
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149 this.graphFilterView.add (this.gFurtherActionPanel, "South");
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150 this.noGraphFilterView.add (this.ngSearchPanel, "First");
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151 this.noGraphFilterView.add (this.ngStructureFilterPanel, "Center");
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152 this.noGraphFilterView.add (this.ngFurtherActionPanel, "Center");
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153 this.annotationComboBoxPanel.add (this.getAnnotations ());
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154 this.switchableViewsPanel.add (this.noGraphFilterView, jalview.appletgui.AnnotationColumnChooser.NO_GRAPH_VIEW);
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155 this.switchableViewsPanel.add (this.graphFilterView, jalview.appletgui.AnnotationColumnChooser.GRAPH_VIEW);
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156 this.setLayout (this.borderLayout1);
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157 this.add (this.annotationComboBoxPanel, "First");
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158 this.add (this.switchableViewsPanel, "Center");
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159 this.add (this.actionPanel, "South");
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160 this.selectedAnnotationChanged ();
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162 }, $fz.isPrivate = true, $fz));
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163 Clazz.overrideMethod (c$, "reset",
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165 if (this.getOldColumnSelection () != null) {
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166 this.av.getColumnSelection ().clear ();
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167 if (this.av.getAnnotationColumnSelectionState () != null) {
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168 var oldSelection = this.av.getAnnotationColumnSelectionState ().getOldColumnSelection ();
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169 if (oldSelection != null && oldSelection.getHiddenColumns () != null && !oldSelection.getHiddenColumns ().isEmpty ()) {
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170 for (var itr = oldSelection.getHiddenColumns ().iterator (); itr.hasNext (); ) {
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171 var positions = itr.next ();
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172 this.av.hideColumns (positions[0], positions[1]);
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174 }this.av.setColumnSelection (oldSelection);
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175 }this.ap.paintAlignment (true);
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177 Clazz.overrideMethod (c$, "adjustmentValueChanged",
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179 if (!this.adjusting) {
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180 this.thresholdValue.setText ((this.slider.getValue () / 1000) + "");
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181 this.valueChanged (!this.sliderDragging);
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182 }}, "java.awt.event.AdjustmentEvent");
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183 Clazz.defineMethod (c$, "addSliderMouseListeners",
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185 this.slider.addMouseListener (((Clazz.isClassDefined ("jalview.appletgui.AnnotationColumnChooser$1") ? 0 : jalview.appletgui.AnnotationColumnChooser.$AnnotationColumnChooser$1$ ()), Clazz.innerTypeInstance (jalview.appletgui.AnnotationColumnChooser$1, this, null)));
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187 Clazz.overrideMethod (c$, "valueChanged",
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188 function (updateAllAnnotation) {
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189 if (this.slider.isEnabled ()) {
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190 this.getCurrentAnnotation ().threshold.value = this.slider.getValue () / 1000;
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191 this.updateView ();
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192 this.ap.paintAlignment (false);
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194 Clazz.defineMethod (c$, "getThreshold",
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196 return this.threshold;
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198 Clazz.defineMethod (c$, "setThreshold",
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199 function (threshold) {
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200 this.threshold = threshold;
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201 }, "awt2swing.Choice");
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202 Clazz.defineMethod (c$, "getAnnotations",
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204 return this.annotations;
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206 Clazz.defineMethod (c$, "setAnnotations",
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207 function (annotations) {
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208 this.annotations = annotations;
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209 }, "awt2swing.Choice");
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210 Clazz.overrideMethod (c$, "updateView",
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212 if (this.adjusting) {
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214 }var filterParams = new jalview.viewmodel.annotationfilter.AnnotationFilterParameter ();
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215 this.setCurrentAnnotation (this.av.getAlignment ().getAlignmentAnnotation ()[this.getAnnotations ().getSelectedIndex ()]);
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216 var selectedThresholdItem = this.getSelectedThresholdItem (this.getThreshold ().getSelectedIndex ());
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217 this.slider.setEnabled (true);
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218 this.thresholdValue.setEnabled (true);
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219 if (selectedThresholdItem == -1) {
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220 this.slider.setEnabled (false);
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221 this.thresholdValue.setEnabled (false);
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222 this.thresholdValue.setText ("");
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223 } else if (selectedThresholdItem != -1) {
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224 if (this.getCurrentAnnotation ().threshold == null) {
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225 this.getCurrentAnnotation ().setThreshold ( new jalview.datamodel.GraphLine ((this.getCurrentAnnotation ().graphMax - this.getCurrentAnnotation ().graphMin) / 2, "Threshold", java.awt.Color.black));
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226 }this.adjusting = true;
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227 var range = this.getCurrentAnnotation ().graphMax * 1000 - this.getCurrentAnnotation ().graphMin * 1000;
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228 this.slider.setMinimum (Clazz.floatToInt (this.getCurrentAnnotation ().graphMin * 1000));
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229 this.slider.setMaximum (Clazz.floatToInt (this.getCurrentAnnotation ().graphMax * 1000));
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230 this.slider.setValue (Clazz.floatToInt (this.getCurrentAnnotation ().threshold.value * 1000));
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231 this.thresholdValue.setText (this.getCurrentAnnotation ().threshold.value + "");
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232 this.slider.setEnabled (true);
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233 this.thresholdValue.setEnabled (true);
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234 this.adjusting = false;
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235 filterParams.setThresholdType (jalview.viewmodel.annotationfilter.AnnotationFilterParameter.ThresholdType.NO_THRESHOLD);
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236 if (this.getCurrentAnnotation ().graph != 0) {
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237 filterParams.setThresholdValue (this.getCurrentAnnotation ().threshold.value);
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238 if (selectedThresholdItem == 1) {
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239 filterParams.setThresholdType (jalview.viewmodel.annotationfilter.AnnotationFilterParameter.ThresholdType.ABOVE_THRESHOLD);
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240 } else if (selectedThresholdItem == 0) {
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241 filterParams.setThresholdType (jalview.viewmodel.annotationfilter.AnnotationFilterParameter.ThresholdType.BELOW_THRESHOLD);
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242 }}}if (this.currentStructureFilterPanel != null) {
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243 if (this.currentStructureFilterPanel.alphaHelix.getState ()) {
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244 filterParams.setFilterAlphaHelix (true);
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245 }if (this.currentStructureFilterPanel.betaStrand.getState ()) {
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246 filterParams.setFilterBetaSheet (true);
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247 }if (this.currentStructureFilterPanel.turn.getState ()) {
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248 filterParams.setFilterTurn (true);
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249 }}if (this.currentSearchPanel != null) {
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250 if (!this.currentSearchPanel.searchBox.getText ().isEmpty ()) {
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251 this.currentSearchPanel.description.setEnabled (true);
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252 this.currentSearchPanel.displayName.setEnabled (true);
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253 filterParams.setRegexString (this.currentSearchPanel.searchBox.getText ());
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254 if (this.currentSearchPanel.displayName.getState ()) {
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255 filterParams.addRegexSearchField (jalview.viewmodel.annotationfilter.AnnotationFilterParameter.SearchableAnnotationField.DISPLAY_STRING);
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256 }if (this.currentSearchPanel.description.getState ()) {
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257 filterParams.addRegexSearchField (jalview.viewmodel.annotationfilter.AnnotationFilterParameter.SearchableAnnotationField.DESCRIPTION);
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259 this.currentSearchPanel.description.setEnabled (false);
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260 this.currentSearchPanel.displayName.setEnabled (false);
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261 }}this.av.getColumnSelection ().filterAnnotations (this.getCurrentAnnotation ().annotations, filterParams);
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262 this.av.showAllHiddenColumns ();
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263 if (this.getActionOption () == jalview.appletgui.AnnotationColumnChooser.ACTION_OPTION_HIDE) {
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264 this.av.hideSelectedColumns ();
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265 }filterParams = null;
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266 this.av.setAnnotationColumnSelectionState (this);
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267 this.ap.paintAlignment (true);
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269 Clazz.defineMethod (c$, "getOldColumnSelection",
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271 return this.oldColumnSelection;
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273 Clazz.defineMethod (c$, "setOldColumnSelection",
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274 function (currentColumnSelection) {
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275 if (currentColumnSelection != null) {
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276 this.oldColumnSelection = new jalview.datamodel.ColumnSelection (currentColumnSelection);
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277 }}, "jalview.datamodel.ColumnSelection");
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278 Clazz.defineMethod (c$, "getCurrentFutherActionPanel",
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280 return this.currentFurtherActionPanel;
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282 Clazz.defineMethod (c$, "setCurrentFutherActionPanel",
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283 function (currentFutherActionPanel) {
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284 this.currentFurtherActionPanel = currentFutherActionPanel;
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285 }, "jalview.appletgui.AnnotationColumnChooser.FurtherActionPanel");
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286 Clazz.defineMethod (c$, "getCurrentSearchPanel",
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288 return this.currentSearchPanel;
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290 Clazz.defineMethod (c$, "setCurrentSearchPanel",
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291 function (currentSearchPanel) {
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292 this.currentSearchPanel = currentSearchPanel;
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293 }, "jalview.appletgui.AnnotationColumnChooser.SearchPanel");
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294 Clazz.defineMethod (c$, "getActionOption",
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296 return this.actionOption;
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298 Clazz.defineMethod (c$, "setActionOption",
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299 function (actionOption) {
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300 this.actionOption = actionOption;
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302 Clazz.defineMethod (c$, "getCurrentStructureFilterPanel",
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304 return this.currentStructureFilterPanel;
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306 Clazz.defineMethod (c$, "setCurrentStructureFilterPanel",
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307 function (currentStructureFilterPanel) {
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308 this.currentStructureFilterPanel = currentStructureFilterPanel;
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309 }, "jalview.appletgui.AnnotationColumnChooser.StructureFilterPanel");
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310 Clazz.overrideMethod (c$, "itemStateChanged",
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312 if (e.getSource () === this.annotations) {
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313 this.selectedAnnotationChanged ();
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314 } else if (e.getSource () === this.threshold) {
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315 this.threshold_actionPerformed (null);
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316 }}, "java.awt.event.ItemEvent");
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317 Clazz.defineMethod (c$, "selectedAnnotationChanged",
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319 var currentView = jalview.appletgui.AnnotationColumnChooser.NO_GRAPH_VIEW;
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320 if (this.av.getAlignment ().getAlignmentAnnotation ()[this.getAnnotations ().getSelectedIndex ()].graph != 0) {
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321 currentView = jalview.appletgui.AnnotationColumnChooser.GRAPH_VIEW;
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322 }this.gSearchPanel.syncState ();
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323 this.gFurtherActionPanel.syncState ();
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324 this.gStructureFilterPanel.syncState ();
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325 this.ngSearchPanel.syncState ();
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326 this.ngFurtherActionPanel.syncState ();
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327 this.ngStructureFilterPanel.syncState ();
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328 this.switchableViewsLayout.show (this.switchableViewsPanel, currentView);
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329 this.updateView ();
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331 Clazz.overrideMethod (c$, "actionPerformed",
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333 if (evt.getSource () === this.thresholdValue) {
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335 var f = new Float (this.thresholdValue.getText ()).floatValue ();
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336 this.slider.setValue (Clazz.floatToInt (f * 1000));
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337 this.adjustmentValueChanged (null);
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339 if (Clazz.exceptionOf (ex, NumberFormatException)) {
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344 } else if (evt.getSource () === this.ok) {
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345 this.ok_actionPerformed (null);
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346 } else if (evt.getSource () === this.cancel) {
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347 this.cancel_actionPerformed (null);
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348 } else if (evt.getSource () === this.thresholdValue) {
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349 this.thresholdValue_actionPerformed (null);
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351 this.updateView ();
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352 }}, "java.awt.event.ActionEvent");
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353 Clazz.overrideMethod (c$, "mouseClicked",
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355 }, "java.awt.event.MouseEvent");
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356 Clazz.overrideMethod (c$, "mousePressed",
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358 if (e.getSource () === this.slider) {
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359 this.updateView ();
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360 }}, "java.awt.event.MouseEvent");
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361 Clazz.overrideMethod (c$, "mouseReleased",
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363 if (e.getSource () === this.slider) {
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364 this.updateView ();
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365 }}, "java.awt.event.MouseEvent");
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366 Clazz.overrideMethod (c$, "mouseEntered",
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368 if (e.getSource () === this.slider) {
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369 this.updateView ();
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370 }}, "java.awt.event.MouseEvent");
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371 Clazz.overrideMethod (c$, "mouseExited",
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373 if (e.getSource () === this.slider) {
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374 this.updateView ();
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375 }}, "java.awt.event.MouseEvent");
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376 c$.$AnnotationColumnChooser$FurtherActionPanel$ = function () {
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378 c$ = Clazz.decorateAsClass (function () {
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379 Clazz.prepareCallback (this, arguments);
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380 this.aColChooser = null;
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381 this.furtherAction = null;
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382 Clazz.instantialize (this, arguments);
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383 }, jalview.appletgui.AnnotationColumnChooser, "FurtherActionPanel", awt2swing.Panel, java.awt.event.ItemListener);
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384 Clazz.prepareFields (c$, function () {
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385 this.furtherAction = new awt2swing.Choice ();
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387 Clazz.makeConstructor (c$,
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389 Clazz.superConstructor (this, jalview.appletgui.AnnotationColumnChooser.FurtherActionPanel, []);
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390 this.aColChooser = a;
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391 this.furtherAction.addItem ("Select");
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392 this.furtherAction.addItem ("Hide");
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393 this.furtherAction.addItemListener (this);
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395 this.add (this.furtherAction);
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396 }, "jalview.appletgui.AnnotationColumnChooser");
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397 Clazz.defineMethod (c$, "syncState",
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399 if (this.aColChooser.getActionOption () == jalview.appletgui.AnnotationColumnChooser.ACTION_OPTION_HIDE) {
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400 this.furtherAction.select ("Hide");
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402 this.furtherAction.select ("Select");
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404 Clazz.overrideMethod (c$, "itemStateChanged",
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406 this.aColChooser.setCurrentFutherActionPanel (this);
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407 if (this.furtherAction.getSelectedItem ().toString ().equalsIgnoreCase ("Select")) {
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408 this.b$["jalview.appletgui.AnnotationColumnChooser"].setActionOption (1);
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409 this.b$["jalview.appletgui.AnnotationColumnChooser"].updateView ();
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411 this.b$["jalview.appletgui.AnnotationColumnChooser"].setActionOption (jalview.appletgui.AnnotationColumnChooser.ACTION_OPTION_HIDE);
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412 this.b$["jalview.appletgui.AnnotationColumnChooser"].updateView ();
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413 }}, "java.awt.event.ItemEvent");
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416 c$.$AnnotationColumnChooser$StructureFilterPanel$ = function () {
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418 c$ = Clazz.decorateAsClass (function () {
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419 Clazz.prepareCallback (this, arguments);
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420 this.aColChooser = null;
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421 this.alphaHelix = null;
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422 this.betaStrand = null;
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425 Clazz.instantialize (this, arguments);
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426 }, jalview.appletgui.AnnotationColumnChooser, "StructureFilterPanel", jalview.appletgui.TitledPanel, java.awt.event.ItemListener);
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427 Clazz.prepareFields (c$, function () {
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428 this.alphaHelix = new awt2swing.Checkbox ();
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429 this.betaStrand = new awt2swing.Checkbox ();
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430 this.turn = new awt2swing.Checkbox ();
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431 this.all = new awt2swing.Checkbox ();
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433 Clazz.makeConstructor (c$,
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435 Clazz.superConstructor (this, jalview.appletgui.AnnotationColumnChooser.StructureFilterPanel, []);
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436 this.aColChooser = a;
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437 this.alphaHelix.setLabel (jalview.util.MessageManager.getString ("label.alpha_helix"));
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438 this.alphaHelix.setBackground (java.awt.Color.white);
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439 this.alphaHelix.addItemListener (this);
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440 this.betaStrand.setLabel (jalview.util.MessageManager.getString ("label.beta_strand"));
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441 this.betaStrand.setBackground (java.awt.Color.white);
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442 this.betaStrand.addItemListener (this);
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443 this.turn.setLabel (jalview.util.MessageManager.getString ("label.turn"));
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444 this.turn.setBackground (java.awt.Color.white);
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445 this.turn.addItemListener (this);
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446 this.all.setLabel (jalview.util.MessageManager.getString ("label.select_all"));
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447 this.all.setBackground (java.awt.Color.white);
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448 this.all.addItemListener (this);
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449 this.setBackground (java.awt.Color.white);
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450 this.setTitle ("Structure Filter");
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451 this.add (this.all);
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452 this.add (this.alphaHelix);
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453 this.add (this.betaStrand);
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454 this.add (this.turn);
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455 }, "jalview.appletgui.AnnotationColumnChooser");
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456 Clazz.defineMethod (c$, "alphaHelix_actionPerformed",
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458 this.updateSelectAllState ();
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459 this.aColChooser.setCurrentStructureFilterPanel (this);
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460 this.aColChooser.updateView ();
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462 Clazz.defineMethod (c$, "betaStrand_actionPerformed",
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464 this.updateSelectAllState ();
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465 this.aColChooser.setCurrentStructureFilterPanel (this);
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466 this.aColChooser.updateView ();
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468 Clazz.defineMethod (c$, "turn_actionPerformed",
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470 this.updateSelectAllState ();
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471 this.aColChooser.setCurrentStructureFilterPanel (this);
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472 this.aColChooser.updateView ();
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474 Clazz.defineMethod (c$, "all_actionPerformed",
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476 if (this.all.getState ()) {
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477 this.alphaHelix.setState (true);
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478 this.betaStrand.setState (true);
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479 this.turn.setState (true);
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481 this.alphaHelix.setState (false);
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482 this.betaStrand.setState (false);
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483 this.turn.setState (false);
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484 }this.aColChooser.setCurrentStructureFilterPanel (this);
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485 this.aColChooser.updateView ();
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487 Clazz.defineMethod (c$, "updateSelectAllState",
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489 if (this.alphaHelix.getState () && this.betaStrand.getState () && this.turn.getState ()) {
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490 this.all.setState (true);
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492 this.all.setState (false);
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494 Clazz.defineMethod (c$, "syncState",
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496 var a = this.aColChooser.getCurrentStructureFilterPanel ();
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498 this.alphaHelix.setState (a.alphaHelix.getState ());
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499 this.betaStrand.setState (a.betaStrand.getState ());
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500 this.turn.setState (a.turn.getState ());
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501 if (a.all.getState ()) {
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502 this.all.setState (true);
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503 this.alphaHelix.setState (true);
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504 this.betaStrand.setState (true);
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505 this.turn.setState (true);
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507 Clazz.overrideMethod (c$, "itemStateChanged",
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509 if (a.getSource () === this.alphaHelix) {
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510 this.alphaHelix_actionPerformed ();
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511 } else if (a.getSource () === this.betaStrand) {
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512 this.betaStrand_actionPerformed ();
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513 } else if (a.getSource () === this.turn) {
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514 this.turn_actionPerformed ();
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515 } else if (a.getSource () === this.all) {
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516 this.all_actionPerformed ();
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517 }}, "java.awt.event.ItemEvent");
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520 c$.$AnnotationColumnChooser$SearchPanel$ = function () {
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522 c$ = Clazz.decorateAsClass (function () {
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523 Clazz.prepareCallback (this, arguments);
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524 this.aColChooser = null;
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525 this.displayName = null;
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526 this.description = null;
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527 this.searchBox = null;
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528 Clazz.instantialize (this, arguments);
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529 }, jalview.appletgui.AnnotationColumnChooser, "SearchPanel", jalview.appletgui.TitledPanel, java.awt.event.ItemListener);
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530 Clazz.prepareFields (c$, function () {
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531 this.displayName = new awt2swing.Checkbox ();
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532 this.description = new awt2swing.Checkbox ();
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533 this.searchBox = new awt2swing.TextField (10);
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535 Clazz.makeConstructor (c$,
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537 Clazz.superConstructor (this, jalview.appletgui.AnnotationColumnChooser.SearchPanel, []);
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538 this.aColChooser = a;
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539 this.searchBox.addTextListener (((Clazz.isClassDefined ("jalview.appletgui.AnnotationColumnChooser$SearchPanel$1") ? 0 : jalview.appletgui.AnnotationColumnChooser.SearchPanel.$AnnotationColumnChooser$SearchPanel$1$ ()), Clazz.innerTypeInstance (jalview.appletgui.AnnotationColumnChooser$SearchPanel$1, this, null)));
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540 this.displayName.setLabel (jalview.util.MessageManager.getString ("label.display_name"));
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541 this.displayName.setEnabled (false);
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542 this.displayName.addItemListener (this);
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543 this.description.setLabel (jalview.util.MessageManager.getString ("label.description"));
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544 this.description.setEnabled (false);
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545 this.description.addItemListener (this);
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546 this.setTitle ("Search Filter");
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548 this.add (this.searchBox);
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549 this.add (this.displayName);
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550 this.add (this.description);
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551 }, "jalview.appletgui.AnnotationColumnChooser");
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552 Clazz.defineMethod (c$, "displayNameCheckboxAction",
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554 this.aColChooser.setCurrentSearchPanel (this);
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555 this.aColChooser.updateView ();
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557 Clazz.defineMethod (c$, "discriptionCheckboxAction",
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559 this.aColChooser.setCurrentSearchPanel (this);
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560 this.aColChooser.updateView ();
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562 Clazz.defineMethod (c$, "searchStringAction",
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564 this.aColChooser.setCurrentSearchPanel (this);
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565 this.aColChooser.updateView ();
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567 Clazz.defineMethod (c$, "syncState",
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569 var a = this.aColChooser.getCurrentSearchPanel ();
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571 this.description.setEnabled (a.description.isEnabled ());
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572 this.description.setState (a.description.getState ());
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573 this.displayName.setEnabled (a.displayName.isEnabled ());
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574 this.displayName.setState (a.displayName.getState ());
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575 this.searchBox.setText (a.searchBox.getText ());
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577 Clazz.overrideMethod (c$, "itemStateChanged",
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579 if (a.getSource () === this.displayName) {
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580 this.displayNameCheckboxAction ();
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581 } else if (a.getSource () === this.description) {
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582 this.discriptionCheckboxAction ();
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583 }}, "java.awt.event.ItemEvent");
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584 c$.$AnnotationColumnChooser$SearchPanel$1$ = function () {
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586 c$ = Clazz.declareAnonymous (jalview.appletgui, "AnnotationColumnChooser$SearchPanel$1", null, java.awt.event.TextListener);
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587 Clazz.overrideMethod (c$, "textValueChanged",
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589 this.b$["jalview.appletgui.AnnotationColumnChooser.SearchPanel"].searchStringAction ();
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590 }, "java.awt.event.TextEvent");
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595 c$.$AnnotationColumnChooser$1$ = function () {
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597 c$ = Clazz.declareAnonymous (jalview.appletgui, "AnnotationColumnChooser$1", java.awt.event.MouseAdapter);
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598 Clazz.defineMethod (c$, "mousePressed",
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600 this.b$["jalview.appletgui.AnnotationColumnChooser"].sliderDragging = true;
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601 Clazz.superCall (this, jalview.appletgui.AnnotationColumnChooser$1, "mousePressed", [e]);
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602 }, "java.awt.event.MouseEvent");
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603 Clazz.defineMethod (c$, "mouseDragged",
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605 this.b$["jalview.appletgui.AnnotationColumnChooser"].sliderDragging = true;
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606 Clazz.superCall (this, jalview.appletgui.AnnotationColumnChooser$1, "mouseDragged", [e]);
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607 }, "java.awt.event.MouseEvent");
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608 Clazz.overrideMethod (c$, "mouseReleased",
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610 if (this.b$["jalview.appletgui.AnnotationColumnChooser"].sliderDragging) {
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611 this.b$["jalview.appletgui.AnnotationColumnChooser"].sliderDragging = false;
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612 this.b$["jalview.appletgui.AnnotationColumnChooser"].valueChanged (true);
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613 }this.b$["jalview.appletgui.AnnotationColumnChooser"].ap.paintAlignment (true);
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614 }, "java.awt.event.MouseEvent");
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617 Clazz.defineStatics (c$,
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618 "ACTION_OPTION_SELECT", 1,
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619 "ACTION_OPTION_HIDE", 2,
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620 "NO_GRAPH_VIEW", "0",
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621 "GRAPH_VIEW", "1");
\r