-Clazz.declarePackage ("jalview.appletgui");
-Clazz.load (["awt2swing.Checkbox", "$.Panel", "jalview.api.FeatureSettingsControllerI", "java.awt.event.ActionListener", "$.AdjustmentListener", "$.ItemListener", "$.MouseListener", "$.MouseMotionListener"], "jalview.appletgui.FeatureSettings", ["awt2swing.Button", "$.Frame", "$.Label", "$.MenuItem", "$.PopupMenu", "$.ScrollPane", "$.Scrollbar", "jalview.appletgui.FeatureColourChooser", "$.UserDefinedColours", "jalview.bin.JalviewLite", "jalview.schemes.GraduatedColor", "jalview.util.MessageManager", "java.awt.BorderLayout", "$.Color", "$.Font", "$.GridLayout", "$.Toolkit", "java.awt.event.WindowAdapter", "java.lang.Boolean", "$.Error", "java.util.Vector"], function () {
-c$ = Clazz.decorateAsClass (function () {
-this.fr = null;
-this.ap = null;
-this.av = null;
-this.frame = null;
-this.groupPanel = null;
-this.featurePanel = null;
-this.scrollPane = null;
-this.linkImage = null;
-this.transparency = null;
-this.groupItemListener = null;
-this.selectedCheck = null;
-this.dragging = false;
-if (!Clazz.isClassDefined ("jalview.appletgui.FeatureSettings.MyCheckbox")) {
-jalview.appletgui.FeatureSettings.$FeatureSettings$MyCheckbox$ ();
-}
-Clazz.instantialize (this, arguments);
-}, jalview.appletgui, "FeatureSettings", awt2swing.Panel, [java.awt.event.ItemListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.ActionListener, java.awt.event.AdjustmentListener, jalview.api.FeatureSettingsControllerI]);
-Clazz.prepareFields (c$, function () {
-this.featurePanel = new awt2swing.Panel ();
-this.groupItemListener = ((Clazz.isClassDefined ("jalview.appletgui.FeatureSettings$1") ? 0 : jalview.appletgui.FeatureSettings.$FeatureSettings$1$ ()), Clazz.innerTypeInstance (jalview.appletgui.FeatureSettings$1, this, null));
-});
-Clazz.makeConstructor (c$,
-function (ap) {
-Clazz.superConstructor (this, jalview.appletgui.FeatureSettings, []);
-this.ap = ap;
-this.av = ap.av;
-ap.av.featureSettings = this;
-this.fr = ap.seqPanel.seqCanvas.getFeatureRenderer ();
-this.transparency = new awt2swing.Scrollbar (0, 100 - Clazz.floatToInt (this.fr.getTransparency () * 100), 1, 1, 100);
-if (this.fr.isTransparencyAvailable ()) {
-this.transparency.addAdjustmentListener (this);
-} else {
-this.transparency.setEnabled (false);
-}var url = this.getClass ().getResource ("/images/link.gif");
-if (url != null) {
-this.linkImage = java.awt.Toolkit.getDefaultToolkit ().getImage (url);
-}if (this.av.isShowSequenceFeatures () || !this.fr.hasRenderOrder ()) {
-this.fr.findAllFeatures (true);
-}this.discoverAllFeatureData ();
-this.setLayout ( new java.awt.BorderLayout ());
-this.scrollPane = new awt2swing.ScrollPane ();
-this.scrollPane.add (this.featurePanel);
-if (this.fr.getAllFeatureColours () != null && this.fr.getAllFeatureColours ().size () > 0) {
-this.add (this.scrollPane, "Center");
-}var invert = new awt2swing.Button ("Invert Selection");
-invert.addActionListener (this);
-var lowerPanel = new awt2swing.Panel ( new java.awt.GridLayout (2, 1, 5, 10));
-lowerPanel.add (invert);
-var tPanel = new awt2swing.Panel ( new java.awt.BorderLayout ());
-if (this.fr.isTransparencyAvailable ()) {
-tPanel.add (this.transparency, "Center");
-tPanel.add ( new awt2swing.Label ("Transparency"), "East");
-} else {
-tPanel.add ( new awt2swing.Label ("Transparency not available in this web browser"), "Center");
-}lowerPanel.add (tPanel, "South");
-this.add (lowerPanel, "South");
-if (this.groupPanel != null) {
-this.groupPanel.setLayout ( new java.awt.GridLayout (Clazz.doubleToInt ((this.fr.getFeatureGroupsSize ()) / 4) + 1, 4));
-this.groupPanel.validate ();
-this.add (this.groupPanel, "North");
-}this.frame = new awt2swing.Frame ();
-this.frame.add (this);
-var me = this;
-this.frame.addWindowListener (((Clazz.isClassDefined ("jalview.appletgui.FeatureSettings$2") ? 0 : jalview.appletgui.FeatureSettings.$FeatureSettings$2$ ()), Clazz.innerTypeInstance (jalview.appletgui.FeatureSettings$2, this, Clazz.cloneFinals ("me", me))));
-var height = this.featurePanel.getComponentCount () * 50 + 60;
-height = Math.max (200, height);
-height = Math.min (400, height);
-var width = 300;
-jalview.bin.JalviewLite.addFrame (this.frame, jalview.util.MessageManager.getString ("label.feature_settings"), width, height);
-}, "jalview.appletgui.AlignmentPanel");
-Clazz.defineMethod (c$, "PaintComponent",
-function (g) {
-g.setColor (java.awt.Color.black);
-g.drawString (jalview.util.MessageManager.getString ("label.no_features_added_to_this_alignment"), 10, 20);
-g.drawString (jalview.util.MessageManager.getString ("label.features_can_be_added_from_searches_1"), 10, 40);
-g.drawString (jalview.util.MessageManager.getString ("label.features_can_be_added_from_searches_2"), 10, 60);
-}, "java.awt.Graphics");
-Clazz.defineMethod (c$, "popupSort",
-function (check, minmax, x, y) {
-var type = check.type;
-var typeCol = this.fr.getFeatureStyle (type);
-var men = new awt2swing.PopupMenu (jalview.util.MessageManager.formatMessage ("label.settings_for_type", Clazz.newArray (-1, [type])));
-var scr = new awt2swing.MenuItem (jalview.util.MessageManager.getString ("label.sort_by_score"));
-men.add (scr);
-var me = this;
-scr.addActionListener (((Clazz.isClassDefined ("jalview.appletgui.FeatureSettings$3") ? 0 : jalview.appletgui.FeatureSettings.$FeatureSettings$3$ ()), Clazz.innerTypeInstance (jalview.appletgui.FeatureSettings$3, this, Clazz.cloneFinals ("me", me, "type", type))));
-var dens = new awt2swing.MenuItem (jalview.util.MessageManager.getString ("label.sort_by_density"));
-dens.addActionListener (((Clazz.isClassDefined ("jalview.appletgui.FeatureSettings$4") ? 0 : jalview.appletgui.FeatureSettings.$FeatureSettings$4$ ()), Clazz.innerTypeInstance (jalview.appletgui.FeatureSettings$4, this, Clazz.cloneFinals ("me", me, "type", type))));
-men.add (dens);
-if (minmax != null) {
-var typeMinMax = minmax.get (type);
-if (typeMinMax != null && (typeMinMax)[0] != null) {
-var mxcol = new awt2swing.MenuItem ((Clazz.instanceOf (typeCol, java.awt.Color)) ? "Graduated Colour" : "Single Colour");
-men.add (mxcol);
-mxcol.addActionListener (((Clazz.isClassDefined ("jalview.appletgui.FeatureSettings$5") ? 0 : jalview.appletgui.FeatureSettings.$FeatureSettings$5$ ()), Clazz.innerTypeInstance (jalview.appletgui.FeatureSettings$5, this, Clazz.cloneFinals ("typeCol", typeCol, "me", me, "type", type, "check", check))));
-}}this.featurePanel.add (men);
-men.show (this.featurePanel, x, y);
-}, "jalview.appletgui.FeatureSettings.MyCheckbox,java.util.Hashtable,~N,~N");
-Clazz.overrideMethod (c$, "discoverAllFeatureData",
-function () {
-if (this.fr.getAllFeatureColours () != null && this.fr.getAllFeatureColours ().size () > 0) {
-this.rebuildGroups ();
-}this.resetTable (false);
-});
-Clazz.defineMethod (c$, "rebuildGroups",
-function () {
-var rdrw = false;
-if (this.groupPanel == null) {
-this.groupPanel = new awt2swing.Panel ();
-} else {
-rdrw = true;
-this.groupPanel.removeAll ();
-}for (var group, $group = this.fr.getFeatureGroups ().iterator (); $group.hasNext () && ((group = $group.next ()) || true);) {
-var vis = this.fr.checkGroupVisibility (group, false);
-var check = Clazz.innerTypeInstance (jalview.appletgui.FeatureSettings.MyCheckbox, this, null, group, vis, (this.fr.featureLinks != null && this.fr.featureLinks.containsKey (group)));
-check.addMouseListener (this);
-check.setFont ( new java.awt.Font ("Serif", 1, 12));
-check.addItemListener (this.groupItemListener);
-check.setVisible (vis);
-this.groupPanel.add (check);
-}
-if (rdrw) {
-this.groupPanel.validate ();
-}});
-Clazz.defineMethod (c$, "resetTable",
-function (groupsChanged) {
-var tmpfeatures;
-var group = null;
-var type;
-var visibleChecks = new java.util.Vector ();
-var alignment = this.av.getAlignment ();
-for (var i = 0; i < alignment.getHeight (); i++) {
-if (alignment.getSequenceAt (i).getSequenceFeatures () == null) {
-continue;
-}tmpfeatures = alignment.getSequenceAt (i).getSequenceFeatures ();
-var index = 0;
-while (index < tmpfeatures.length) {
-group = tmpfeatures[index].featureGroup;
-if (group == null || this.fr.checkGroupVisibility (group, true)) {
-type = tmpfeatures[index].getType ();
-if (!visibleChecks.contains (type)) {
-visibleChecks.addElement (type);
-}}index++;
-}
-}
-var comps;
-var cSize = this.featurePanel.getComponentCount ();
-var check;
-for (var i = 0; i < cSize; i++) {
-comps = this.featurePanel.getComponents ();
-check = comps[i];
-if (!visibleChecks.contains (check.type)) {
-this.featurePanel.remove (i);
-cSize--;
-i--;
-}}
-if (this.fr.getRenderOrder () != null) {
-var rol = this.fr.getRenderOrder ();
-for (var ro = rol.size () - 1; ro > -1; ro--) {
-var item = rol.get (ro);
-if (!visibleChecks.contains (item)) {
-continue;
-}visibleChecks.removeElement (item);
-this.addCheck (false, item);
-}
-}var en = visibleChecks.elements ();
-while (en.hasMoreElements ()) {
-this.addCheck (groupsChanged, en.nextElement ().toString ());
-}
-this.featurePanel.setLayout ( new java.awt.GridLayout (this.featurePanel.getComponentCount (), 1, 10, 5));
-this.featurePanel.validate ();
-if (this.scrollPane != null) {
-this.scrollPane.validate ();
-}this.itemStateChanged (null);
-}, "~B");
-Clazz.defineMethod (c$, "addCheck",
-function (groupsChanged, type) {
-var addCheck;
-var comps = this.featurePanel.getComponents ();
-var check;
-addCheck = true;
-for (var i = 0; i < this.featurePanel.getComponentCount (); i++) {
-check = comps[i];
-if (check.type.equals (type)) {
-addCheck = false;
-break;
-}}
-if (addCheck) {
-var selected = false;
-if (groupsChanged || this.av.getFeaturesDisplayed ().isVisible (type)) {
-selected = true;
-}check = Clazz.innerTypeInstance (jalview.appletgui.FeatureSettings.MyCheckbox, this, null, type, selected, (this.fr.featureLinks != null && this.fr.featureLinks.containsKey (type)), this.fr.getFeatureStyle (type));
-check.addMouseListener (this);
-check.addMouseMotionListener (this);
-check.addItemListener (this);
-if (groupsChanged) {
-this.featurePanel.add (check, 0);
-} else {
-this.featurePanel.add (check);
-}}}, "~B,~S");
-Clazz.overrideMethod (c$, "actionPerformed",
-function (evt) {
-for (var i = 0; i < this.featurePanel.getComponentCount (); i++) {
-var check = this.featurePanel.getComponent (i);
-check.setState (!check.getState ());
-}
-this.selectionChanged ();
-}, "java.awt.event.ActionEvent");
-Clazz.overrideMethod (c$, "itemStateChanged",
-function (evt) {
-this.selectionChanged ();
-}, "java.awt.event.ItemEvent");
-Clazz.defineMethod (c$, "selectionChanged",
-function () {
-var comps = this.featurePanel.getComponents ();
-var cSize = comps.length;
-var tmp = Clazz.newArray (cSize, 3, null);
-var tmpSize = 0;
-for (var i = 0; i < cSize; i++) {
-var check = comps[i];
-tmp[tmpSize][0] = check.type;
-tmp[tmpSize][1] = this.fr.getFeatureStyle (check.type);
-tmp[tmpSize][2] = new Boolean (check.getState ());
-tmpSize++;
-}
-var data = Clazz.newArray (tmpSize, 3, null);
-System.arraycopy (tmp, 0, data, 0, tmpSize);
-this.fr.setFeaturePriority (data);
-this.ap.paintAlignment (true);
-});
-Clazz.overrideMethod (c$, "mousePressed",
-function (evt) {
-this.selectedCheck = evt.getSource ();
-if (this.fr.featureLinks != null && this.fr.featureLinks.containsKey (this.selectedCheck.type)) {
-if (evt.getX () > this.selectedCheck.stringWidth + 20) {
-evt.consume ();
-}}}, "java.awt.event.MouseEvent");
-Clazz.overrideMethod (c$, "mouseDragged",
-function (evt) {
-if ((evt.getSource ()).getParent () !== this.featurePanel) {
-return;
-}this.dragging = true;
-}, "java.awt.event.MouseEvent");
-Clazz.overrideMethod (c$, "mouseReleased",
-function (evt) {
-if ((evt.getSource ()).getParent () !== this.featurePanel) {
-return;
-}var comp = null;
-var target = null;
-var height = evt.getY () + evt.getComponent ().getLocation ().y;
-if (height > this.featurePanel.getSize ().height) {
-comp = this.featurePanel.getComponent (this.featurePanel.getComponentCount () - 1);
-} else if (height < 0) {
-comp = this.featurePanel.getComponent (0);
-} else {
-comp = this.featurePanel.getComponentAt (evt.getX (), evt.getY () + evt.getComponent ().getLocation ().y);
-}if (comp != null && Clazz.instanceOf (comp, awt2swing.Checkbox)) {
-target = comp;
-}if (this.selectedCheck != null && target != null && this.selectedCheck !== target) {
-var targetIndex = -1;
-for (var i = 0; i < this.featurePanel.getComponentCount (); i++) {
-if (target === this.featurePanel.getComponent (i)) {
-targetIndex = i;
-break;
-}}
-this.featurePanel.remove (this.selectedCheck);
-this.featurePanel.add (this.selectedCheck, targetIndex);
-this.featurePanel.validate ();
-this.itemStateChanged (null);
-}}, "java.awt.event.MouseEvent");
-Clazz.defineMethod (c$, "setUserColour",
-function (feature, originalColour) {
-if (Clazz.instanceOf (originalColour, java.awt.Color) || Clazz.instanceOf (originalColour, jalview.schemes.GraduatedColor)) {
-this.fr.setColour (feature, originalColour);
-} else {
-throw new Error (jalview.util.MessageManager.getString ("error.implementation_error_unsupported_feature_colour_object"));
-}this.refreshTable ();
-}, "~S,~O");
-Clazz.defineMethod (c$, "refreshTable",
-function () {
-this.featurePanel.removeAll ();
-this.resetTable (false);
-this.ap.paintAlignment (true);
-});
-Clazz.overrideMethod (c$, "mouseEntered",
-function (evt) {
-}, "java.awt.event.MouseEvent");
-Clazz.overrideMethod (c$, "mouseExited",
-function (evt) {
-}, "java.awt.event.MouseEvent");
-Clazz.overrideMethod (c$, "mouseClicked",
-function (evt) {
-var check = evt.getSource ();
-if ((evt.getModifiers () & 4) != 0) {
-this.popupSort (check, this.fr.getMinMax (), evt.getX (), evt.getY ());
-}if (this.fr.featureLinks != null && this.fr.featureLinks.containsKey (check.type)) {
-if (evt.getX () > check.stringWidth + 20) {
-evt.consume ();
-var link = this.fr.featureLinks.get (check.type).toString ();
-this.ap.alignFrame.showURL (link.substring (link.indexOf ("|") + 1), link.substring (0, link.indexOf ("|")));
-}}if (check.getParent () !== this.featurePanel) {
-return;
-}if (evt.getClickCount () > 1) {
-var fcol = this.fr.getFeatureStyle (check.type);
-if (Clazz.instanceOf (fcol, java.awt.Color)) {
- new jalview.appletgui.UserDefinedColours (this, check.type, fcol);
-} else {
- new jalview.appletgui.FeatureColourChooser (this, check.type);
-check.updateColor (this.fr.getFeatureStyle (check.type));
-}}}, "java.awt.event.MouseEvent");
-Clazz.overrideMethod (c$, "mouseMoved",
-function (evt) {
-}, "java.awt.event.MouseEvent");
-Clazz.overrideMethod (c$, "adjustmentValueChanged",
-function (evt) {
-this.fr.setTransparency ((100 - this.transparency.getValue ()) / 100);
-this.ap.seqPanel.seqCanvas.repaint ();
-}, "java.awt.event.AdjustmentEvent");
-c$.$FeatureSettings$MyCheckbox$ = function () {
-Clazz.pu$h ();
-c$ = Clazz.decorateAsClass (function () {
-Clazz.prepareCallback (this, arguments);
-this.type = null;
-this.stringWidth = 0;
-this.hasLink = false;
-this.gcol = null;
-this.col = null;
-Clazz.instantialize (this, arguments);
-}, jalview.appletgui.FeatureSettings, "MyCheckbox", awt2swing.Checkbox);
-Clazz.defineMethod (c$, "updateColor",
-function (a) {
-if (Clazz.instanceOf (a, java.awt.Color)) {
-this.col = a;
-this.gcol = null;
-} else if (Clazz.instanceOf (a, jalview.schemes.GraduatedColor)) {
-this.gcol = a;
-this.col = null;
-} else {
-throw new Error (jalview.util.MessageManager.getString ("error.invalid_colour_for_mycheckbox"));
-}if (this.col != null) {
-this.setBackground (this.col);
-} else {
-var b = this.type;
-if (this.gcol.getThreshType () != -1) {
-b += " " + ((this.gcol.getThreshType () == 1) ? "(>)" : "(<)");
-}if (this.gcol.isColourByLabel ()) {
-this.setBackground (java.awt.Color.white);
-b += " (by Label)";
-} else {
-this.setBackground (this.gcol.getMinColor ());
-}this.setLabel (b);
-}this.repaint ();
-}, "~O");
-Clazz.makeConstructor (c$,
-function (a, b, c) {
-Clazz.superConstructor (this, jalview.appletgui.FeatureSettings.MyCheckbox, [a, b]);
-this.type = a;
-var d = this.b$["jalview.appletgui.FeatureSettings"].av.nullFrame.getFontMetrics (this.b$["jalview.appletgui.FeatureSettings"].av.nullFrame.getFont ());
-this.stringWidth = d.stringWidth (a);
-this.hasLink = c;
-}, "~S,~B,~B");
-Clazz.makeConstructor (c$,
-function (a, b, c, d) {
-this.construct (a, b, c);
-this.updateColor (d);
-}, "~S,~B,~B,~O");
-Clazz.defineMethod (c$, "PaintComponent",
-function (a) {
-var b = this.getSize ();
-if (this.gcol != null) {
-if (this.gcol.isColourByLabel ()) {
-a.setColor (java.awt.Color.white);
-a.fillRect (Clazz.doubleToInt (b.width / 2), 0, Clazz.doubleToInt (b.width / 2), b.height);
-} else {
-var c = this.gcol.getMaxColor ();
-a.setColor (c);
-a.fillRect (Clazz.doubleToInt (b.width / 2), 0, Clazz.doubleToInt (b.width / 2), b.height);
-}}if (this.hasLink) {
-a.drawImage (this.b$["jalview.appletgui.FeatureSettings"].linkImage, this.stringWidth + 25, Clazz.doubleToInt ((this.getSize ().height - this.b$["jalview.appletgui.FeatureSettings"].linkImage.getHeight (this)) / 2), this);
-}}, "java.awt.Graphics");
-c$ = Clazz.p0p ();
-};
-c$.$FeatureSettings$1$ = function () {
-Clazz.pu$h ();
-c$ = Clazz.declareAnonymous (jalview.appletgui, "FeatureSettings$1", null, java.awt.event.ItemListener);
-Clazz.overrideMethod (c$, "itemStateChanged",
-function (evt) {
-var source = evt.getSource ();
-this.b$["jalview.appletgui.FeatureSettings"].fr.setGroupVisibility (source.getLabel (), source.getState ());
-this.b$["jalview.appletgui.FeatureSettings"].ap.seqPanel.seqCanvas.repaint ();
-if (this.b$["jalview.appletgui.FeatureSettings"].ap.overviewPanel != null) {
-this.b$["jalview.appletgui.FeatureSettings"].ap.overviewPanel.updateOverviewImage ();
-}this.b$["jalview.appletgui.FeatureSettings"].resetTable (true);
-return;
-}, "java.awt.event.ItemEvent");
-c$ = Clazz.p0p ();
-};
-c$.$FeatureSettings$2$ = function () {
-Clazz.pu$h ();
-c$ = Clazz.declareAnonymous (jalview.appletgui, "FeatureSettings$2", java.awt.event.WindowAdapter);
-Clazz.overrideMethod (c$, "windowClosing",
-function (e) {
-if (this.f$.me.av.featureSettings === this.f$.me) {
-this.f$.me.av.featureSettings = null;
-this.f$.me.ap = null;
-this.f$.me.av = null;
-}}, "java.awt.event.WindowEvent");
-c$ = Clazz.p0p ();
-};
-c$.$FeatureSettings$3$ = function () {
-Clazz.pu$h ();
-c$ = Clazz.declareAnonymous (jalview.appletgui, "FeatureSettings$3", null, java.awt.event.ActionListener);
-Clazz.overrideMethod (c$, "actionPerformed",
-function (e) {
-this.f$.me.ap.alignFrame.avc.sortAlignmentByFeatureScore ( Clazz.newArray (-1, [this.f$.type]));
-}, "java.awt.event.ActionEvent");
-c$ = Clazz.p0p ();
-};
-c$.$FeatureSettings$4$ = function () {
-Clazz.pu$h ();
-c$ = Clazz.declareAnonymous (jalview.appletgui, "FeatureSettings$4", null, java.awt.event.ActionListener);
-Clazz.overrideMethod (c$, "actionPerformed",
-function (e) {
-this.f$.me.ap.alignFrame.avc.sortAlignmentByFeatureDensity ( Clazz.newArray (-1, [this.f$.type]));
-}, "java.awt.event.ActionEvent");
-c$ = Clazz.p0p ();
-};
-c$.$FeatureSettings$5$ = function () {
-Clazz.pu$h ();
-c$ = Clazz.declareAnonymous (jalview.appletgui, "FeatureSettings$5", null, java.awt.event.ActionListener);
-Clazz.overrideMethod (c$, "actionPerformed",
-function (e) {
-if (Clazz.instanceOf (this.f$.typeCol, java.awt.Color)) {
- new jalview.appletgui.FeatureColourChooser (this.f$.me, this.f$.type);
-this.f$.check.updateColor (this.b$["jalview.appletgui.FeatureSettings"].fr.getFeatureStyle (this.f$.type));
-} else {
- new jalview.appletgui.UserDefinedColours (this.f$.me, this.f$.check.type, (this.f$.typeCol));
-}}, "java.awt.event.ActionEvent");
-c$ = Clazz.p0p ();
-};
-});
+Clazz.declarePackage ("jalview.appletgui");\r
+Clazz.load (["awt2swing.Checkbox", "$.Panel", "jalview.api.FeatureSettingsControllerI", "java.awt.event.ActionListener", "$.AdjustmentListener", "$.ItemListener", "$.MouseListener", "$.MouseMotionListener"], "jalview.appletgui.FeatureSettings", ["awt2swing.Button", "$.Frame", "$.Label", "$.MenuItem", "$.PopupMenu", "$.ScrollPane", "$.Scrollbar", "jalview.appletgui.FeatureColourChooser", "$.UserDefinedColours", "jalview.bin.JalviewLite", "jalview.schemes.GraduatedColor", "jalview.util.MessageManager", "java.awt.BorderLayout", "$.Color", "$.Font", "$.GridLayout", "$.Toolkit", "java.awt.event.WindowAdapter", "java.lang.Boolean", "$.Error", "java.util.Vector"], function () {\r
+c$ = Clazz.decorateAsClass (function () {\r
+this.fr = null;\r
+this.ap = null;\r
+this.av = null;\r
+this.frame = null;\r
+this.groupPanel = null;\r
+this.featurePanel = null;\r
+this.scrollPane = null;\r
+this.linkImage = null;\r
+this.transparency = null;\r
+this.groupItemListener = null;\r
+this.selectedCheck = null;\r
+this.dragging = false;\r
+if (!Clazz.isClassDefined ("jalview.appletgui.FeatureSettings.MyCheckbox")) {\r
+jalview.appletgui.FeatureSettings.$FeatureSettings$MyCheckbox$ ();\r
+}\r
+Clazz.instantialize (this, arguments);\r
+}, jalview.appletgui, "FeatureSettings", awt2swing.Panel, [java.awt.event.ItemListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.ActionListener, java.awt.event.AdjustmentListener, jalview.api.FeatureSettingsControllerI]);\r
+Clazz.prepareFields (c$, function () {\r
+this.featurePanel = new awt2swing.Panel ();\r
+this.groupItemListener = ((Clazz.isClassDefined ("jalview.appletgui.FeatureSettings$1") ? 0 : jalview.appletgui.FeatureSettings.$FeatureSettings$1$ ()), Clazz.innerTypeInstance (jalview.appletgui.FeatureSettings$1, this, null));\r
+});\r
+Clazz.makeConstructor (c$, \r
+function (ap) {\r
+Clazz.superConstructor (this, jalview.appletgui.FeatureSettings, []);\r
+this.ap = ap;\r
+this.av = ap.av;\r
+ap.av.featureSettings = this;\r
+this.fr = ap.seqPanel.seqCanvas.getFeatureRenderer ();\r
+this.transparency = new awt2swing.Scrollbar (0, 100 - Clazz.floatToInt (this.fr.getTransparency () * 100), 1, 1, 100);\r
+if (this.fr.isTransparencyAvailable ()) {\r
+this.transparency.addAdjustmentListener (this);\r
+} else {\r
+this.transparency.setEnabled (false);\r
+}var url = this.getClass ().getResource ("/images/link.gif");\r
+if (url != null) {\r
+this.linkImage = java.awt.Toolkit.getDefaultToolkit ().getImage (url);\r
+}if (this.av.isShowSequenceFeatures () || !this.fr.hasRenderOrder ()) {\r
+this.fr.findAllFeatures (true);\r
+}this.discoverAllFeatureData ();\r
+this.setLayout ( new java.awt.BorderLayout ());\r
+this.scrollPane = new awt2swing.ScrollPane ();\r
+this.scrollPane.add (this.featurePanel);\r
+if (this.fr.getAllFeatureColours () != null && this.fr.getAllFeatureColours ().size () > 0) {\r
+this.add (this.scrollPane, "Center");\r
+}var invert = new awt2swing.Button ("Invert Selection");\r
+invert.addActionListener (this);\r
+var lowerPanel = new awt2swing.Panel ( new java.awt.GridLayout (2, 1, 5, 10));\r
+lowerPanel.add (invert);\r
+var tPanel = new awt2swing.Panel ( new java.awt.BorderLayout ());\r
+if (this.fr.isTransparencyAvailable ()) {\r
+tPanel.add (this.transparency, "Center");\r
+tPanel.add ( new awt2swing.Label ("Transparency"), "East");\r
+} else {\r
+tPanel.add ( new awt2swing.Label ("Transparency not available in this web browser"), "Center");\r
+}lowerPanel.add (tPanel, "South");\r
+this.add (lowerPanel, "South");\r
+if (this.groupPanel != null) {\r
+this.groupPanel.setLayout ( new java.awt.GridLayout (Clazz.doubleToInt ((this.fr.getFeatureGroupsSize ()) / 4) + 1, 4));\r
+this.groupPanel.validate ();\r
+this.add (this.groupPanel, "North");\r
+}this.frame = new awt2swing.Frame ();\r
+this.frame.add (this);\r
+var me = this;\r
+this.frame.addWindowListener (((Clazz.isClassDefined ("jalview.appletgui.FeatureSettings$2") ? 0 : jalview.appletgui.FeatureSettings.$FeatureSettings$2$ ()), Clazz.innerTypeInstance (jalview.appletgui.FeatureSettings$2, this, Clazz.cloneFinals ("me", me))));\r
+var height = this.featurePanel.getComponentCount () * 50 + 60;\r
+height = Math.max (200, height);\r
+height = Math.min (400, height);\r
+var width = 300;\r
+jalview.bin.JalviewLite.addFrame (this.frame, jalview.util.MessageManager.getString ("label.feature_settings"), width, height);\r
+}, "jalview.appletgui.AlignmentPanel");\r
+Clazz.defineMethod (c$, "PaintComponent", \r
+function (g) {\r
+g.setColor (java.awt.Color.black);\r
+g.drawString (jalview.util.MessageManager.getString ("label.no_features_added_to_this_alignment"), 10, 20);\r
+g.drawString (jalview.util.MessageManager.getString ("label.features_can_be_added_from_searches_1"), 10, 40);\r
+g.drawString (jalview.util.MessageManager.getString ("label.features_can_be_added_from_searches_2"), 10, 60);\r
+}, "java.awt.Graphics");\r
+Clazz.defineMethod (c$, "popupSort", \r
+function (check, minmax, x, y) {\r
+var type = check.type;\r
+var typeCol = this.fr.getFeatureStyle (type);\r
+var men = new awt2swing.PopupMenu (jalview.util.MessageManager.formatMessage ("label.settings_for_type", Clazz.newArray (-1, [type])));\r
+var scr = new awt2swing.MenuItem (jalview.util.MessageManager.getString ("label.sort_by_score"));\r
+men.add (scr);\r
+var me = this;\r
+scr.addActionListener (((Clazz.isClassDefined ("jalview.appletgui.FeatureSettings$3") ? 0 : jalview.appletgui.FeatureSettings.$FeatureSettings$3$ ()), Clazz.innerTypeInstance (jalview.appletgui.FeatureSettings$3, this, Clazz.cloneFinals ("me", me, "type", type))));\r
+var dens = new awt2swing.MenuItem (jalview.util.MessageManager.getString ("label.sort_by_density"));\r
+dens.addActionListener (((Clazz.isClassDefined ("jalview.appletgui.FeatureSettings$4") ? 0 : jalview.appletgui.FeatureSettings.$FeatureSettings$4$ ()), Clazz.innerTypeInstance (jalview.appletgui.FeatureSettings$4, this, Clazz.cloneFinals ("me", me, "type", type))));\r
+men.add (dens);\r
+if (minmax != null) {\r
+var typeMinMax = minmax.get (type);\r
+if (typeMinMax != null && (typeMinMax)[0] != null) {\r
+var mxcol = new awt2swing.MenuItem ((Clazz.instanceOf (typeCol, java.awt.Color)) ? "Graduated Colour" : "Single Colour");\r
+men.add (mxcol);\r
+mxcol.addActionListener (((Clazz.isClassDefined ("jalview.appletgui.FeatureSettings$5") ? 0 : jalview.appletgui.FeatureSettings.$FeatureSettings$5$ ()), Clazz.innerTypeInstance (jalview.appletgui.FeatureSettings$5, this, Clazz.cloneFinals ("typeCol", typeCol, "me", me, "type", type, "check", check))));\r
+}}this.featurePanel.add (men);\r
+men.show (this.featurePanel, x, y);\r
+}, "jalview.appletgui.FeatureSettings.MyCheckbox,java.util.Hashtable,~N,~N");\r
+Clazz.overrideMethod (c$, "discoverAllFeatureData", \r
+function () {\r
+if (this.fr.getAllFeatureColours () != null && this.fr.getAllFeatureColours ().size () > 0) {\r
+this.rebuildGroups ();\r
+}this.resetTable (false);\r
+});\r
+Clazz.defineMethod (c$, "rebuildGroups", \r
+function () {\r
+var rdrw = false;\r
+if (this.groupPanel == null) {\r
+this.groupPanel = new awt2swing.Panel ();\r
+} else {\r
+rdrw = true;\r
+this.groupPanel.removeAll ();\r
+}for (var group, $group = this.fr.getFeatureGroups ().iterator (); $group.hasNext () && ((group = $group.next ()) || true);) {\r
+var vis = this.fr.checkGroupVisibility (group, false);\r
+var check = Clazz.innerTypeInstance (jalview.appletgui.FeatureSettings.MyCheckbox, this, null, group, vis, (this.fr.featureLinks != null && this.fr.featureLinks.containsKey (group)));\r
+check.addMouseListener (this);\r
+check.setFont ( new java.awt.Font ("Serif", 1, 12));\r
+check.addItemListener (this.groupItemListener);\r
+check.setVisible (vis);\r
+this.groupPanel.add (check);\r
+}\r
+if (rdrw) {\r
+this.groupPanel.validate ();\r
+}});\r
+Clazz.defineMethod (c$, "resetTable", \r
+function (groupsChanged) {\r
+var tmpfeatures;\r
+var group = null;\r
+var type;\r
+var visibleChecks = new java.util.Vector ();\r
+var alignment = this.av.getAlignment ();\r
+for (var i = 0; i < alignment.getHeight (); i++) {\r
+if (alignment.getSequenceAt (i).getSequenceFeatures () == null) {\r
+continue;\r
+}tmpfeatures = alignment.getSequenceAt (i).getSequenceFeatures ();\r
+var index = 0;\r
+while (index < tmpfeatures.length) {\r
+group = tmpfeatures[index].featureGroup;\r
+if (group == null || this.fr.checkGroupVisibility (group, true)) {\r
+type = tmpfeatures[index].getType ();\r
+if (!visibleChecks.contains (type)) {\r
+visibleChecks.addElement (type);\r
+}}index++;\r
+}\r
+}\r
+var comps;\r
+var cSize = this.featurePanel.getComponentCount ();\r
+var check;\r
+for (var i = 0; i < cSize; i++) {\r
+comps = this.featurePanel.getComponents ();\r
+check = comps[i];\r
+if (!visibleChecks.contains (check.type)) {\r
+this.featurePanel.remove (i);\r
+cSize--;\r
+i--;\r
+}}\r
+if (this.fr.getRenderOrder () != null) {\r
+var rol = this.fr.getRenderOrder ();\r
+for (var ro = rol.size () - 1; ro > -1; ro--) {\r
+var item = rol.get (ro);\r
+if (!visibleChecks.contains (item)) {\r
+continue;\r
+}visibleChecks.removeElement (item);\r
+this.addCheck (false, item);\r
+}\r
+}var en = visibleChecks.elements ();\r
+while (en.hasMoreElements ()) {\r
+this.addCheck (groupsChanged, en.nextElement ().toString ());\r
+}\r
+this.featurePanel.setLayout ( new java.awt.GridLayout (this.featurePanel.getComponentCount (), 1, 10, 5));\r
+this.featurePanel.validate ();\r
+if (this.scrollPane != null) {\r
+this.scrollPane.validate ();\r
+}this.itemStateChanged (null);\r
+}, "~B");\r
+Clazz.defineMethod (c$, "addCheck", \r
+function (groupsChanged, type) {\r
+var addCheck;\r
+var comps = this.featurePanel.getComponents ();\r
+var check;\r
+addCheck = true;\r
+for (var i = 0; i < this.featurePanel.getComponentCount (); i++) {\r
+check = comps[i];\r
+if (check.type.equals (type)) {\r
+addCheck = false;\r
+break;\r
+}}\r
+if (addCheck) {\r
+var selected = false;\r
+if (groupsChanged || this.av.getFeaturesDisplayed ().isVisible (type)) {\r
+selected = true;\r
+}check = Clazz.innerTypeInstance (jalview.appletgui.FeatureSettings.MyCheckbox, this, null, type, selected, (this.fr.featureLinks != null && this.fr.featureLinks.containsKey (type)), this.fr.getFeatureStyle (type));\r
+check.addMouseListener (this);\r
+check.addMouseMotionListener (this);\r
+check.addItemListener (this);\r
+if (groupsChanged) {\r
+this.featurePanel.add (check, 0);\r
+} else {\r
+this.featurePanel.add (check);\r
+}}}, "~B,~S");\r
+Clazz.overrideMethod (c$, "actionPerformed", \r
+function (evt) {\r
+for (var i = 0; i < this.featurePanel.getComponentCount (); i++) {\r
+var check = this.featurePanel.getComponent (i);\r
+check.setState (!check.getState ());\r
+}\r
+this.selectionChanged ();\r
+}, "java.awt.event.ActionEvent");\r
+Clazz.overrideMethod (c$, "itemStateChanged", \r
+function (evt) {\r
+this.selectionChanged ();\r
+}, "java.awt.event.ItemEvent");\r
+Clazz.defineMethod (c$, "selectionChanged", \r
+function () {\r
+var comps = this.featurePanel.getComponents ();\r
+var cSize = comps.length;\r
+var tmp = Clazz.newArray (cSize, 3, null);\r
+var tmpSize = 0;\r
+for (var i = 0; i < cSize; i++) {\r
+var check = comps[i];\r
+tmp[tmpSize][0] = check.type;\r
+tmp[tmpSize][1] = this.fr.getFeatureStyle (check.type);\r
+tmp[tmpSize][2] = new Boolean (check.getState ());\r
+tmpSize++;\r
+}\r
+var data = Clazz.newArray (tmpSize, 3, null);\r
+System.arraycopy (tmp, 0, data, 0, tmpSize);\r
+this.fr.setFeaturePriority (data);\r
+this.ap.paintAlignment (true);\r
+});\r
+Clazz.overrideMethod (c$, "mousePressed", \r
+function (evt) {\r
+this.selectedCheck = evt.getSource ();\r
+if (this.fr.featureLinks != null && this.fr.featureLinks.containsKey (this.selectedCheck.type)) {\r
+if (evt.getX () > this.selectedCheck.stringWidth + 20) {\r
+evt.consume ();\r
+}}}, "java.awt.event.MouseEvent");\r
+Clazz.overrideMethod (c$, "mouseDragged", \r
+function (evt) {\r
+if ((evt.getSource ()).getParent () !== this.featurePanel) {\r
+return;\r
+}this.dragging = true;\r
+}, "java.awt.event.MouseEvent");\r
+Clazz.overrideMethod (c$, "mouseReleased", \r
+function (evt) {\r
+if ((evt.getSource ()).getParent () !== this.featurePanel) {\r
+return;\r
+}var comp = null;\r
+var target = null;\r
+var height = evt.getY () + evt.getComponent ().getLocation ().y;\r
+if (height > this.featurePanel.getSize ().height) {\r
+comp = this.featurePanel.getComponent (this.featurePanel.getComponentCount () - 1);\r
+} else if (height < 0) {\r
+comp = this.featurePanel.getComponent (0);\r
+} else {\r
+comp = this.featurePanel.getComponentAt (evt.getX (), evt.getY () + evt.getComponent ().getLocation ().y);\r
+}if (comp != null && Clazz.instanceOf (comp, awt2swing.Checkbox)) {\r
+target = comp;\r
+}if (this.selectedCheck != null && target != null && this.selectedCheck !== target) {\r
+var targetIndex = -1;\r
+for (var i = 0; i < this.featurePanel.getComponentCount (); i++) {\r
+if (target === this.featurePanel.getComponent (i)) {\r
+targetIndex = i;\r
+break;\r
+}}\r
+this.featurePanel.remove (this.selectedCheck);\r
+this.featurePanel.add (this.selectedCheck, targetIndex);\r
+this.featurePanel.validate ();\r
+this.itemStateChanged (null);\r
+}}, "java.awt.event.MouseEvent");\r
+Clazz.defineMethod (c$, "setUserColour", \r
+function (feature, originalColour) {\r
+if (Clazz.instanceOf (originalColour, java.awt.Color) || Clazz.instanceOf (originalColour, jalview.schemes.GraduatedColor)) {\r
+this.fr.setColour (feature, originalColour);\r
+} else {\r
+throw new Error (jalview.util.MessageManager.getString ("error.implementation_error_unsupported_feature_colour_object"));\r
+}this.refreshTable ();\r
+}, "~S,~O");\r
+Clazz.defineMethod (c$, "refreshTable", \r
+function () {\r
+this.featurePanel.removeAll ();\r
+this.resetTable (false);\r
+this.ap.paintAlignment (true);\r
+});\r
+Clazz.overrideMethod (c$, "mouseEntered", \r
+function (evt) {\r
+}, "java.awt.event.MouseEvent");\r
+Clazz.overrideMethod (c$, "mouseExited", \r
+function (evt) {\r
+}, "java.awt.event.MouseEvent");\r
+Clazz.overrideMethod (c$, "mouseClicked", \r
+function (evt) {\r
+var check = evt.getSource ();\r
+if ((evt.getModifiers () & 4) != 0) {\r
+this.popupSort (check, this.fr.getMinMax (), evt.getX (), evt.getY ());\r
+}if (this.fr.featureLinks != null && this.fr.featureLinks.containsKey (check.type)) {\r
+if (evt.getX () > check.stringWidth + 20) {\r
+evt.consume ();\r
+var link = this.fr.featureLinks.get (check.type).toString ();\r
+this.ap.alignFrame.showURL (link.substring (link.indexOf ("|") + 1), link.substring (0, link.indexOf ("|")));\r
+}}if (check.getParent () !== this.featurePanel) {\r
+return;\r
+}if (evt.getClickCount () > 1) {\r
+var fcol = this.fr.getFeatureStyle (check.type);\r
+if (Clazz.instanceOf (fcol, java.awt.Color)) {\r
+ new jalview.appletgui.UserDefinedColours (this, check.type, fcol);\r
+} else {\r
+ new jalview.appletgui.FeatureColourChooser (this, check.type);\r
+check.updateColor (this.fr.getFeatureStyle (check.type));\r
+}}}, "java.awt.event.MouseEvent");\r
+Clazz.overrideMethod (c$, "mouseMoved", \r
+function (evt) {\r
+}, "java.awt.event.MouseEvent");\r
+Clazz.overrideMethod (c$, "adjustmentValueChanged", \r
+function (evt) {\r
+this.fr.setTransparency ((100 - this.transparency.getValue ()) / 100);\r
+this.ap.seqPanel.seqCanvas.repaint ();\r
+}, "java.awt.event.AdjustmentEvent");\r
+c$.$FeatureSettings$MyCheckbox$ = function () {\r
+Clazz.pu$h ();\r
+c$ = Clazz.decorateAsClass (function () {\r
+Clazz.prepareCallback (this, arguments);\r
+this.type = null;\r
+this.stringWidth = 0;\r
+this.hasLink = false;\r
+this.gcol = null;\r
+this.col = null;\r
+Clazz.instantialize (this, arguments);\r
+}, jalview.appletgui.FeatureSettings, "MyCheckbox", awt2swing.Checkbox);\r
+Clazz.defineMethod (c$, "updateColor", \r
+function (a) {\r
+if (Clazz.instanceOf (a, java.awt.Color)) {\r
+this.col = a;\r
+this.gcol = null;\r
+} else if (Clazz.instanceOf (a, jalview.schemes.GraduatedColor)) {\r
+this.gcol = a;\r
+this.col = null;\r
+} else {\r
+throw new Error (jalview.util.MessageManager.getString ("error.invalid_colour_for_mycheckbox"));\r
+}if (this.col != null) {\r
+this.setBackground (this.col);\r
+} else {\r
+var b = this.type;\r
+if (this.gcol.getThreshType () != -1) {\r
+b += " " + ((this.gcol.getThreshType () == 1) ? "(>)" : "(<)");\r
+}if (this.gcol.isColourByLabel ()) {\r
+this.setBackground (java.awt.Color.white);\r
+b += " (by Label)";\r
+} else {\r
+this.setBackground (this.gcol.getMinColor ());\r
+}this.setLabel (b);\r
+}this.repaint ();\r
+}, "~O");\r
+Clazz.makeConstructor (c$, \r
+function (a, b, c) {\r
+Clazz.superConstructor (this, jalview.appletgui.FeatureSettings.MyCheckbox, [a, b]);\r
+this.type = a;\r
+var d = this.b$["jalview.appletgui.FeatureSettings"].av.nullFrame.getFontMetrics (this.b$["jalview.appletgui.FeatureSettings"].av.nullFrame.getFont ());\r
+this.stringWidth = d.stringWidth (a);\r
+this.hasLink = c;\r
+}, "~S,~B,~B");\r
+Clazz.makeConstructor (c$, \r
+function (a, b, c, d) {\r
+this.construct (a, b, c);\r
+this.updateColor (d);\r
+}, "~S,~B,~B,~O");\r
+Clazz.defineMethod (c$, "PaintComponent", \r
+function (a) {\r
+var b = this.getSize ();\r
+if (this.gcol != null) {\r
+if (this.gcol.isColourByLabel ()) {\r
+a.setColor (java.awt.Color.white);\r
+a.fillRect (Clazz.doubleToInt (b.width / 2), 0, Clazz.doubleToInt (b.width / 2), b.height);\r
+} else {\r
+var c = this.gcol.getMaxColor ();\r
+a.setColor (c);\r
+a.fillRect (Clazz.doubleToInt (b.width / 2), 0, Clazz.doubleToInt (b.width / 2), b.height);\r
+}}if (this.hasLink) {\r
+a.drawImage (this.b$["jalview.appletgui.FeatureSettings"].linkImage, this.stringWidth + 25, Clazz.doubleToInt ((this.getSize ().height - this.b$["jalview.appletgui.FeatureSettings"].linkImage.getHeight (this)) / 2), this);\r
+}}, "java.awt.Graphics");\r
+c$ = Clazz.p0p ();\r
+};\r
+c$.$FeatureSettings$1$ = function () {\r
+Clazz.pu$h ();\r
+c$ = Clazz.declareAnonymous (jalview.appletgui, "FeatureSettings$1", null, java.awt.event.ItemListener);\r
+Clazz.overrideMethod (c$, "itemStateChanged", \r
+function (evt) {\r
+var source = evt.getSource ();\r
+this.b$["jalview.appletgui.FeatureSettings"].fr.setGroupVisibility (source.getLabel (), source.getState ());\r
+this.b$["jalview.appletgui.FeatureSettings"].ap.seqPanel.seqCanvas.repaint ();\r
+if (this.b$["jalview.appletgui.FeatureSettings"].ap.overviewPanel != null) {\r
+this.b$["jalview.appletgui.FeatureSettings"].ap.overviewPanel.updateOverviewImage ();\r
+}this.b$["jalview.appletgui.FeatureSettings"].resetTable (true);\r
+return;\r
+}, "java.awt.event.ItemEvent");\r
+c$ = Clazz.p0p ();\r
+};\r
+c$.$FeatureSettings$2$ = function () {\r
+Clazz.pu$h ();\r
+c$ = Clazz.declareAnonymous (jalview.appletgui, "FeatureSettings$2", java.awt.event.WindowAdapter);\r
+Clazz.overrideMethod (c$, "windowClosing", \r
+function (e) {\r
+if (this.f$.me.av.featureSettings === this.f$.me) {\r
+this.f$.me.av.featureSettings = null;\r
+this.f$.me.ap = null;\r
+this.f$.me.av = null;\r
+}}, "java.awt.event.WindowEvent");\r
+c$ = Clazz.p0p ();\r
+};\r
+c$.$FeatureSettings$3$ = function () {\r
+Clazz.pu$h ();\r
+c$ = Clazz.declareAnonymous (jalview.appletgui, "FeatureSettings$3", null, java.awt.event.ActionListener);\r
+Clazz.overrideMethod (c$, "actionPerformed", \r
+function (e) {\r
+this.f$.me.ap.alignFrame.avc.sortAlignmentByFeatureScore ( Clazz.newArray (-1, [this.f$.type]));\r
+}, "java.awt.event.ActionEvent");\r
+c$ = Clazz.p0p ();\r
+};\r
+c$.$FeatureSettings$4$ = function () {\r
+Clazz.pu$h ();\r
+c$ = Clazz.declareAnonymous (jalview.appletgui, "FeatureSettings$4", null, java.awt.event.ActionListener);\r
+Clazz.overrideMethod (c$, "actionPerformed", \r
+function (e) {\r
+this.f$.me.ap.alignFrame.avc.sortAlignmentByFeatureDensity ( Clazz.newArray (-1, [this.f$.type]));\r
+}, "java.awt.event.ActionEvent");\r
+c$ = Clazz.p0p ();\r
+};\r
+c$.$FeatureSettings$5$ = function () {\r
+Clazz.pu$h ();\r
+c$ = Clazz.declareAnonymous (jalview.appletgui, "FeatureSettings$5", null, java.awt.event.ActionListener);\r
+Clazz.overrideMethod (c$, "actionPerformed", \r
+function (e) {\r
+if (Clazz.instanceOf (this.f$.typeCol, java.awt.Color)) {\r
+ new jalview.appletgui.FeatureColourChooser (this.f$.me, this.f$.type);\r
+this.f$.check.updateColor (this.b$["jalview.appletgui.FeatureSettings"].fr.getFeatureStyle (this.f$.type));\r
+} else {\r
+ new jalview.appletgui.UserDefinedColours (this.f$.me, this.f$.check.type, (this.f$.typeCol));\r
+}}, "java.awt.event.ActionEvent");\r
+c$ = Clazz.p0p ();\r
+};\r
+});\r
git://source.jalview.org / jalviewjs.git / blobdiff