-Clazz.declarePackage ("jalview.appletgui");
-Clazz.load (["jalview.appletgui.EmbmenuFrame", "java.awt.event.ActionListener", "$.ItemListener", "awt2swing.Button", "$.CheckboxMenuItem", "$.Choice", "$.Label", "$.Menu", "$.MenuBar", "$.MenuItem", "$.Panel", "java.awt.BorderLayout", "$.FlowLayout"], "jalview.appletgui.PCAPanel", ["awt2swing.Frame", "jalview.appletgui.AlignFrame", "$.CutAndPasteTransfer", "$.RotatableCanvas", "jalview.bin.JalviewLite", "jalview.datamodel.Alignment", "jalview.util.MessageManager", "jalview.viewmodel.PCAModel", "java.awt.Color", "$.Font", "java.lang.Thread"], function () {
-c$ = Clazz.decorateAsClass (function () {
-this.rc = null;
-this.av = null;
-this.pcaModel = null;
-this.top = 0;
-this.jPanel2 = null;
-this.jLabel1 = null;
-this.jLabel2 = null;
-this.jLabel3 = null;
-this.xCombobox = null;
-this.yCombobox = null;
-this.zCombobox = null;
-this.resetButton = null;
-this.flowLayout1 = null;
-this.borderLayout1 = null;
-this.menuBar1 = null;
-this.menu1 = null;
-this.menu2 = null;
-this.calcSettings = null;
-this.labels = null;
-this.protSetting = null;
-this.nuclSetting = null;
-this.values = null;
-this.inputData = null;
-Clazz.instantialize (this, arguments);
-}, jalview.appletgui, "PCAPanel", jalview.appletgui.EmbmenuFrame, [Runnable, java.awt.event.ActionListener, java.awt.event.ItemListener]);
-Clazz.prepareFields (c$, function () {
-this.jPanel2 = new awt2swing.Panel ();
-this.jLabel1 = new awt2swing.Label ();
-this.jLabel2 = new awt2swing.Label ();
-this.jLabel3 = new awt2swing.Label ();
-this.xCombobox = new awt2swing.Choice ();
-this.yCombobox = new awt2swing.Choice ();
-this.zCombobox = new awt2swing.Choice ();
-this.resetButton = new awt2swing.Button ();
-this.flowLayout1 = new java.awt.FlowLayout ();
-this.borderLayout1 = new java.awt.BorderLayout ();
-this.menuBar1 = new awt2swing.MenuBar ();
-this.menu1 = new awt2swing.Menu ();
-this.menu2 = new awt2swing.Menu ();
-this.calcSettings = new awt2swing.Menu ();
-this.labels = new awt2swing.CheckboxMenuItem ();
-this.protSetting = new awt2swing.CheckboxMenuItem ();
-this.nuclSetting = new awt2swing.CheckboxMenuItem ();
-this.values = new awt2swing.MenuItem ();
-this.inputData = new awt2swing.MenuItem ();
-});
-Clazz.makeConstructor (c$,
-function (av) {
-Clazz.superConstructor (this, jalview.appletgui.PCAPanel, []);
-try {
-this.jbInit ();
-} catch (e) {
-if (Clazz.exceptionOf (e, Exception)) {
-e.printStackTrace ();
-} else {
-throw e;
-}
-}
-for (var i = 1; i < 8; i++) {
-this.xCombobox.addItem ("dim " + i);
-this.yCombobox.addItem ("dim " + i);
-this.zCombobox.addItem ("dim " + i);
-}
-this.av = av;
-var selected = av.getSelectionGroup () != null && av.getSelectionGroup ().getSize () > 0;
-var seqstrings = av.getAlignmentView (selected);
-var nucleotide = av.getAlignment ().isNucleotide ();
-var seqs;
-if (!selected) {
-seqs = av.getAlignment ().getSequencesArray ();
-} else {
-seqs = av.getSelectionGroup ().getSequencesInOrder (av.getAlignment ());
-}var sq = seqstrings.getSequences ();
-var length = sq[0].getWidth ();
-for (var i = 0; i < seqs.length; i++) {
-if (sq[i].getWidth () != length) {
-System.out.println ("Sequences must be equal length for PCA analysis");
-return;
-}}
-this.pcaModel = new jalview.viewmodel.PCAModel (seqstrings, seqs, nucleotide);
-this.rc = new jalview.appletgui.RotatableCanvas (av);
-this.embedMenuIfNeeded (this.rc);
-this.add (this.rc, "Center");
-jalview.bin.JalviewLite.addFrame (this, jalview.util.MessageManager.getString ("label.principal_component_analysis"), 475, 400);
-var worker = new Thread (this);
-worker.start ();
-}, "jalview.appletgui.AlignViewport");
-Clazz.overrideMethod (c$, "run",
-function () {
-this.calcSettings.setEnabled (false);
-this.rc.setEnabled (false);
-try {
-this.nuclSetting.setState (this.pcaModel.isNucleotide ());
-this.protSetting.setState (!this.pcaModel.isNucleotide ());
-this.pcaModel.run ();
-this.xCombobox.select (new Integer (0));
-this.yCombobox.select (new Integer (1));
-this.zCombobox.select (new Integer (2));
-this.pcaModel.updateRc (this.rc);
-this.top = this.pcaModel.getTop ();
-} catch (x) {
-if (Clazz.exceptionOf (x, OutOfMemoryError)) {
-System.err.println ("Out of memory when calculating PCA.");
-return;
-} else {
-throw x;
-}
-}
-this.calcSettings.setEnabled (true);
-this.rc.setEnabled (true);
-this.rc.repaint ();
-this.repaint ();
-});
-Clazz.defineMethod (c$, "doDimensionChange",
-function () {
-if (this.top == 0) {
-return;
-}var dim1 = this.top - this.xCombobox.getSelectedIndex ();
-var dim2 = this.top - this.yCombobox.getSelectedIndex ();
-var dim3 = this.top - this.zCombobox.getSelectedIndex ();
-this.pcaModel.updateRcView (dim1, dim2, dim3);
-this.rc.img = null;
-this.rc.rotmat.setIdentity ();
-this.rc.initAxes ();
-this.rc.paint (this.rc.getGraphics ());
-});
-Clazz.overrideMethod (c$, "actionPerformed",
-function (evt) {
-if (evt.getSource () === this.inputData) {
-this.showOriginalData ();
-}if (evt.getSource () === this.resetButton) {
-this.xCombobox.select (new Integer (0));
-this.yCombobox.select (new Integer (1));
-this.zCombobox.select (new Integer (2));
-this.doDimensionChange ();
-}if (evt.getSource () === this.values) {
-this.values_actionPerformed ();
-}}, "java.awt.event.ActionEvent");
-Clazz.overrideMethod (c$, "itemStateChanged",
-function (evt) {
-if (evt.getSource () === this.xCombobox) {
-this.xCombobox_actionPerformed ();
-} else if (evt.getSource () === this.yCombobox) {
-this.yCombobox_actionPerformed ();
-} else if (evt.getSource () === this.zCombobox) {
-this.zCombobox_actionPerformed ();
-} else if (evt.getSource () === this.labels) {
-this.labels_itemStateChanged (evt);
-} else if (evt.getSource () === this.nuclSetting) {
-if (!this.pcaModel.isNucleotide ()) {
-this.pcaModel.setNucleotide (true);
- new Thread (this).start ();
-}} else if (evt.getSource () === this.protSetting) {
-if (this.pcaModel.isNucleotide ()) {
-this.pcaModel.setNucleotide (false);
- new Thread (this).start ();
-}}}, "java.awt.event.ItemEvent");
-Clazz.defineMethod (c$, "xCombobox_actionPerformed",
-function () {
-this.doDimensionChange ();
-});
-Clazz.defineMethod (c$, "yCombobox_actionPerformed",
-function () {
-this.doDimensionChange ();
-});
-Clazz.defineMethod (c$, "zCombobox_actionPerformed",
-function () {
-this.doDimensionChange ();
-});
-Clazz.defineMethod (c$, "values_actionPerformed",
-function () {
-var cap = new jalview.appletgui.CutAndPasteTransfer (false, null);
-var frame = new awt2swing.Frame ();
-frame.add (cap);
-jalview.bin.JalviewLite.addFrame (frame, jalview.util.MessageManager.getString ("label.pca_details"), 500, 500);
-cap.setText (this.pcaModel.getDetails ());
-});
-Clazz.defineMethod (c$, "showOriginalData",
-function () {
-var gc = '-';
-try {
-gc = this.av.getGapCharacter ();
-} catch (ex) {
-if (Clazz.exceptionOf (ex, Exception)) {
-} else {
-throw ex;
-}
-}
-;var alAndColsel = this.pcaModel.getSeqtrings ().getAlignmentAndColumnSelection (gc);
-if (alAndColsel != null && alAndColsel[0] != null) {
-var al = new jalview.datamodel.Alignment (alAndColsel[0]);
-var af = new jalview.appletgui.AlignFrame (al, this.av.applet, "Original Data for PCA", false);
-af.viewport.setHiddenColumns (alAndColsel[1]);
-}});
-Clazz.defineMethod (c$, "labels_itemStateChanged",
-function (itemEvent) {
-this.rc.showLabels (this.labels.getState ());
-}, "java.awt.event.ItemEvent");
-Clazz.defineMethod (c$, "jbInit",
-($fz = function () {
-this.setLayout (this.borderLayout1);
-this.jPanel2.setLayout (this.flowLayout1);
-this.jLabel1.setFont ( new java.awt.Font ("Verdana", 0, 12));
-this.jLabel1.setText ("x=");
-this.jLabel2.setFont ( new java.awt.Font ("Verdana", 0, 12));
-this.jLabel2.setText ("y=");
-this.jLabel3.setFont ( new java.awt.Font ("Verdana", 0, 12));
-this.jLabel3.setText ("z=");
-this.jPanel2.setBackground (java.awt.Color.white);
-this.zCombobox.setFont ( new java.awt.Font ("Verdana", 0, 12));
-this.zCombobox.addItemListener (this);
-this.yCombobox.setFont ( new java.awt.Font ("Verdana", 0, 12));
-this.yCombobox.addItemListener (this);
-this.xCombobox.setFont ( new java.awt.Font ("Verdana", 0, 12));
-this.xCombobox.addItemListener (this);
-this.resetButton.setFont ( new java.awt.Font ("Verdana", 0, 12));
-this.resetButton.setLabel (jalview.util.MessageManager.getString ("action.reset"));
-this.resetButton.addActionListener (this);
-this.setMenuBar (this.menuBar1);
-this.menu1.setLabel (jalview.util.MessageManager.getString ("action.file"));
-this.menu2.setLabel (jalview.util.MessageManager.getString ("action.view"));
-this.calcSettings.setLabel (jalview.util.MessageManager.getString ("action.change_params"));
-this.labels.setLabel (jalview.util.MessageManager.getString ("label.labels"));
-this.labels.addItemListener (this);
-this.values.setLabel (jalview.util.MessageManager.getString ("label.output_values"));
-this.values.addActionListener (this);
-this.inputData.setLabel (jalview.util.MessageManager.getString ("label.input_data"));
-this.nuclSetting.setLabel (jalview.util.MessageManager.getString ("label.nucleotide_matrix"));
-this.nuclSetting.addItemListener (this);
-this.protSetting.setLabel (jalview.util.MessageManager.getString ("label.protein_matrix"));
-this.protSetting.addItemListener (this);
-this.add (this.jPanel2, "South");
-this.jPanel2.add (this.jLabel1, null);
-this.jPanel2.add (this.xCombobox, null);
-this.jPanel2.add (this.jLabel2, null);
-this.jPanel2.add (this.yCombobox, null);
-this.jPanel2.add (this.jLabel3, null);
-this.jPanel2.add (this.zCombobox, null);
-this.jPanel2.add (this.resetButton, null);
-this.menuBar1.add (this.menu1);
-this.menuBar1.add (this.menu2);
-this.menuBar1.add (this.calcSettings);
-this.menu2.add (this.labels);
-this.menu1.add (this.values);
-this.menu1.add (this.inputData);
-this.calcSettings.add (this.nuclSetting);
-this.calcSettings.add (this.protSetting);
-this.inputData.addActionListener (this);
-}, $fz.isPrivate = true, $fz));
-});
+Clazz.declarePackage ("jalview.appletgui");\r
+Clazz.load (["jalview.appletgui.EmbmenuFrame", "java.awt.event.ActionListener", "$.ItemListener", "awt2swing.Button", "$.CheckboxMenuItem", "$.Choice", "$.Label", "$.Menu", "$.MenuBar", "$.MenuItem", "$.Panel", "java.awt.BorderLayout", "$.FlowLayout"], "jalview.appletgui.PCAPanel", ["awt2swing.Frame", "jalview.appletgui.AlignFrame", "$.CutAndPasteTransfer", "$.RotatableCanvas", "jalview.bin.JalviewLite", "jalview.datamodel.Alignment", "jalview.util.MessageManager", "jalview.viewmodel.PCAModel", "java.awt.Color", "$.Font", "java.lang.Thread"], function () {\r
+c$ = Clazz.decorateAsClass (function () {\r
+this.rc = null;\r
+this.av = null;\r
+this.pcaModel = null;\r
+this.top = 0;\r
+this.jPanel2 = null;\r
+this.jLabel1 = null;\r
+this.jLabel2 = null;\r
+this.jLabel3 = null;\r
+this.xCombobox = null;\r
+this.yCombobox = null;\r
+this.zCombobox = null;\r
+this.resetButton = null;\r
+this.flowLayout1 = null;\r
+this.borderLayout1 = null;\r
+this.menuBar1 = null;\r
+this.menu1 = null;\r
+this.menu2 = null;\r
+this.calcSettings = null;\r
+this.labels = null;\r
+this.protSetting = null;\r
+this.nuclSetting = null;\r
+this.values = null;\r
+this.inputData = null;\r
+Clazz.instantialize (this, arguments);\r
+}, jalview.appletgui, "PCAPanel", jalview.appletgui.EmbmenuFrame, [Runnable, java.awt.event.ActionListener, java.awt.event.ItemListener]);\r
+Clazz.prepareFields (c$, function () {\r
+this.jPanel2 = new awt2swing.Panel ();\r
+this.jLabel1 = new awt2swing.Label ();\r
+this.jLabel2 = new awt2swing.Label ();\r
+this.jLabel3 = new awt2swing.Label ();\r
+this.xCombobox = new awt2swing.Choice ();\r
+this.yCombobox = new awt2swing.Choice ();\r
+this.zCombobox = new awt2swing.Choice ();\r
+this.resetButton = new awt2swing.Button ();\r
+this.flowLayout1 = new java.awt.FlowLayout ();\r
+this.borderLayout1 = new java.awt.BorderLayout ();\r
+this.menuBar1 = new awt2swing.MenuBar ();\r
+this.menu1 = new awt2swing.Menu ();\r
+this.menu2 = new awt2swing.Menu ();\r
+this.calcSettings = new awt2swing.Menu ();\r
+this.labels = new awt2swing.CheckboxMenuItem ();\r
+this.protSetting = new awt2swing.CheckboxMenuItem ();\r
+this.nuclSetting = new awt2swing.CheckboxMenuItem ();\r
+this.values = new awt2swing.MenuItem ();\r
+this.inputData = new awt2swing.MenuItem ();\r
+});\r
+Clazz.makeConstructor (c$, \r
+function (av) {\r
+Clazz.superConstructor (this, jalview.appletgui.PCAPanel, []);\r
+try {\r
+this.jbInit ();\r
+} catch (e) {\r
+if (Clazz.exceptionOf (e, Exception)) {\r
+e.printStackTrace ();\r
+} else {\r
+throw e;\r
+}\r
+}\r
+for (var i = 1; i < 8; i++) {\r
+this.xCombobox.addItem ("dim " + i);\r
+this.yCombobox.addItem ("dim " + i);\r
+this.zCombobox.addItem ("dim " + i);\r
+}\r
+this.av = av;\r
+var selected = av.getSelectionGroup () != null && av.getSelectionGroup ().getSize () > 0;\r
+var seqstrings = av.getAlignmentView (selected);\r
+var nucleotide = av.getAlignment ().isNucleotide ();\r
+var seqs;\r
+if (!selected) {\r
+seqs = av.getAlignment ().getSequencesArray ();\r
+} else {\r
+seqs = av.getSelectionGroup ().getSequencesInOrder (av.getAlignment ());\r
+}var sq = seqstrings.getSequences ();\r
+var length = sq[0].getWidth ();\r
+for (var i = 0; i < seqs.length; i++) {\r
+if (sq[i].getWidth () != length) {\r
+System.out.println ("Sequences must be equal length for PCA analysis");\r
+return;\r
+}}\r
+this.pcaModel = new jalview.viewmodel.PCAModel (seqstrings, seqs, nucleotide);\r
+this.rc = new jalview.appletgui.RotatableCanvas (av);\r
+this.embedMenuIfNeeded (this.rc);\r
+this.add (this.rc, "Center");\r
+jalview.bin.JalviewLite.addFrame (this, jalview.util.MessageManager.getString ("label.principal_component_analysis"), 475, 400);\r
+var worker = new Thread (this);\r
+worker.start ();\r
+}, "jalview.appletgui.AlignViewport");\r
+Clazz.overrideMethod (c$, "run", \r
+function () {\r
+this.calcSettings.setEnabled (false);\r
+this.rc.setEnabled (false);\r
+try {\r
+this.nuclSetting.setState (this.pcaModel.isNucleotide ());\r
+this.protSetting.setState (!this.pcaModel.isNucleotide ());\r
+this.pcaModel.run ();\r
+this.xCombobox.select (new Integer (0));\r
+this.yCombobox.select (new Integer (1));\r
+this.zCombobox.select (new Integer (2));\r
+this.pcaModel.updateRc (this.rc);\r
+this.top = this.pcaModel.getTop ();\r
+} catch (x) {\r
+if (Clazz.exceptionOf (x, OutOfMemoryError)) {\r
+System.err.println ("Out of memory when calculating PCA.");\r
+return;\r
+} else {\r
+throw x;\r
+}\r
+}\r
+this.calcSettings.setEnabled (true);\r
+this.rc.setEnabled (true);\r
+this.rc.repaint ();\r
+this.repaint ();\r
+});\r
+Clazz.defineMethod (c$, "doDimensionChange", \r
+function () {\r
+if (this.top == 0) {\r
+return;\r
+}var dim1 = this.top - this.xCombobox.getSelectedIndex ();\r
+var dim2 = this.top - this.yCombobox.getSelectedIndex ();\r
+var dim3 = this.top - this.zCombobox.getSelectedIndex ();\r
+this.pcaModel.updateRcView (dim1, dim2, dim3);\r
+this.rc.img = null;\r
+this.rc.rotmat.setIdentity ();\r
+this.rc.initAxes ();\r
+this.rc.paint (this.rc.getGraphics ());\r
+});\r
+Clazz.overrideMethod (c$, "actionPerformed", \r
+function (evt) {\r
+if (evt.getSource () === this.inputData) {\r
+this.showOriginalData ();\r
+}if (evt.getSource () === this.resetButton) {\r
+this.xCombobox.select (new Integer (0));\r
+this.yCombobox.select (new Integer (1));\r
+this.zCombobox.select (new Integer (2));\r
+this.doDimensionChange ();\r
+}if (evt.getSource () === this.values) {\r
+this.values_actionPerformed ();\r
+}}, "java.awt.event.ActionEvent");\r
+Clazz.overrideMethod (c$, "itemStateChanged", \r
+function (evt) {\r
+if (evt.getSource () === this.xCombobox) {\r
+this.xCombobox_actionPerformed ();\r
+} else if (evt.getSource () === this.yCombobox) {\r
+this.yCombobox_actionPerformed ();\r
+} else if (evt.getSource () === this.zCombobox) {\r
+this.zCombobox_actionPerformed ();\r
+} else if (evt.getSource () === this.labels) {\r
+this.labels_itemStateChanged (evt);\r
+} else if (evt.getSource () === this.nuclSetting) {\r
+if (!this.pcaModel.isNucleotide ()) {\r
+this.pcaModel.setNucleotide (true);\r
+ new Thread (this).start ();\r
+}} else if (evt.getSource () === this.protSetting) {\r
+if (this.pcaModel.isNucleotide ()) {\r
+this.pcaModel.setNucleotide (false);\r
+ new Thread (this).start ();\r
+}}}, "java.awt.event.ItemEvent");\r
+Clazz.defineMethod (c$, "xCombobox_actionPerformed", \r
+function () {\r
+this.doDimensionChange ();\r
+});\r
+Clazz.defineMethod (c$, "yCombobox_actionPerformed", \r
+function () {\r
+this.doDimensionChange ();\r
+});\r
+Clazz.defineMethod (c$, "zCombobox_actionPerformed", \r
+function () {\r
+this.doDimensionChange ();\r
+});\r
+Clazz.defineMethod (c$, "values_actionPerformed", \r
+function () {\r
+var cap = new jalview.appletgui.CutAndPasteTransfer (false, null);\r
+var frame = new awt2swing.Frame ();\r
+frame.add (cap);\r
+jalview.bin.JalviewLite.addFrame (frame, jalview.util.MessageManager.getString ("label.pca_details"), 500, 500);\r
+cap.setText (this.pcaModel.getDetails ());\r
+});\r
+Clazz.defineMethod (c$, "showOriginalData", \r
+function () {\r
+var gc = '-';\r
+try {\r
+gc = this.av.getGapCharacter ();\r
+} catch (ex) {\r
+if (Clazz.exceptionOf (ex, Exception)) {\r
+} else {\r
+throw ex;\r
+}\r
+}\r
+;var alAndColsel = this.pcaModel.getSeqtrings ().getAlignmentAndColumnSelection (gc);\r
+if (alAndColsel != null && alAndColsel[0] != null) {\r
+var al = new jalview.datamodel.Alignment (alAndColsel[0]);\r
+var af = new jalview.appletgui.AlignFrame (al, this.av.applet, "Original Data for PCA", false);\r
+af.viewport.setHiddenColumns (alAndColsel[1]);\r
+}});\r
+Clazz.defineMethod (c$, "labels_itemStateChanged", \r
+function (itemEvent) {\r
+this.rc.showLabels (this.labels.getState ());\r
+}, "java.awt.event.ItemEvent");\r
+Clazz.defineMethod (c$, "jbInit", \r
+($fz = function () {\r
+this.setLayout (this.borderLayout1);\r
+this.jPanel2.setLayout (this.flowLayout1);\r
+this.jLabel1.setFont ( new java.awt.Font ("Verdana", 0, 12));\r
+this.jLabel1.setText ("x=");\r
+this.jLabel2.setFont ( new java.awt.Font ("Verdana", 0, 12));\r
+this.jLabel2.setText ("y=");\r
+this.jLabel3.setFont ( new java.awt.Font ("Verdana", 0, 12));\r
+this.jLabel3.setText ("z=");\r
+this.jPanel2.setBackground (java.awt.Color.white);\r
+this.zCombobox.setFont ( new java.awt.Font ("Verdana", 0, 12));\r
+this.zCombobox.addItemListener (this);\r
+this.yCombobox.setFont ( new java.awt.Font ("Verdana", 0, 12));\r
+this.yCombobox.addItemListener (this);\r
+this.xCombobox.setFont ( new java.awt.Font ("Verdana", 0, 12));\r
+this.xCombobox.addItemListener (this);\r
+this.resetButton.setFont ( new java.awt.Font ("Verdana", 0, 12));\r
+this.resetButton.setLabel (jalview.util.MessageManager.getString ("action.reset"));\r
+this.resetButton.addActionListener (this);\r
+this.setMenuBar (this.menuBar1);\r
+this.menu1.setLabel (jalview.util.MessageManager.getString ("action.file"));\r
+this.menu2.setLabel (jalview.util.MessageManager.getString ("action.view"));\r
+this.calcSettings.setLabel (jalview.util.MessageManager.getString ("action.change_params"));\r
+this.labels.setLabel (jalview.util.MessageManager.getString ("label.labels"));\r
+this.labels.addItemListener (this);\r
+this.values.setLabel (jalview.util.MessageManager.getString ("label.output_values"));\r
+this.values.addActionListener (this);\r
+this.inputData.setLabel (jalview.util.MessageManager.getString ("label.input_data"));\r
+this.nuclSetting.setLabel (jalview.util.MessageManager.getString ("label.nucleotide_matrix"));\r
+this.nuclSetting.addItemListener (this);\r
+this.protSetting.setLabel (jalview.util.MessageManager.getString ("label.protein_matrix"));\r
+this.protSetting.addItemListener (this);\r
+this.add (this.jPanel2, "South");\r
+this.jPanel2.add (this.jLabel1, null);\r
+this.jPanel2.add (this.xCombobox, null);\r
+this.jPanel2.add (this.jLabel2, null);\r
+this.jPanel2.add (this.yCombobox, null);\r
+this.jPanel2.add (this.jLabel3, null);\r
+this.jPanel2.add (this.zCombobox, null);\r
+this.jPanel2.add (this.resetButton, null);\r
+this.menuBar1.add (this.menu1);\r
+this.menuBar1.add (this.menu2);\r
+this.menuBar1.add (this.calcSettings);\r
+this.menu2.add (this.labels);\r
+this.menu1.add (this.values);\r
+this.menu1.add (this.inputData);\r
+this.calcSettings.add (this.nuclSetting);\r
+this.calcSettings.add (this.protSetting);\r
+this.inputData.addActionListener (this);\r
+}, $fz.isPrivate = true, $fz));\r
+});\r
git://source.jalview.org / jalviewjs.git / blobdiff