-Clazz.declarePackage ("jalview.datamodel");
-Clazz.load (null, "jalview.datamodel.SequenceFeature", ["java.util.Hashtable", "$.Vector"], function () {
-c$ = Clazz.decorateAsClass (function () {
-this.begin = 0;
-this.end = 0;
-this.score = 0;
-this.type = null;
-this.description = null;
-this.otherDetails = null;
-this.links = null;
-this.featureGroup = null;
-Clazz.instantialize (this, arguments);
-}, jalview.datamodel, "SequenceFeature");
-Clazz.makeConstructor (c$,
-function () {
-});
-Clazz.makeConstructor (c$,
-function (cpy) {
-if (cpy != null) {
-this.begin = cpy.begin;
-this.end = cpy.end;
-this.score = cpy.score;
-if (cpy.type != null) {
-this.type = String.instantialize (cpy.type);
-}if (cpy.description != null) {
-this.description = String.instantialize (cpy.description);
-}if (cpy.featureGroup != null) {
-this.featureGroup = String.instantialize (cpy.featureGroup);
-}if (cpy.otherDetails != null) {
-try {
-this.otherDetails = cpy.otherDetails.clone ();
-} catch (e) {
-if (Clazz.exceptionOf (e, Exception)) {
-} else {
-throw e;
-}
-}
-}if (cpy.links != null && cpy.links.size () > 0) {
-this.links = new java.util.Vector ();
-for (var i = 0, iSize = cpy.links.size (); i < iSize; i++) {
-this.links.addElement (cpy.links.elementAt (i));
-}
-}}}, "jalview.datamodel.SequenceFeature");
-Clazz.makeConstructor (c$,
-function (type, desc, status, begin, end, featureGroup) {
-this.type = type;
-this.description = desc;
-this.setValue ("status", status);
-this.begin = begin;
-this.end = end;
-this.featureGroup = featureGroup;
-}, "~S,~S,~S,~N,~N,~S");
-Clazz.makeConstructor (c$,
-function (type, desc, begin, end, score, featureGroup) {
-this.type = type;
-this.description = desc;
-this.begin = begin;
-this.end = end;
-this.score = score;
-this.featureGroup = featureGroup;
-}, "~S,~S,~N,~N,~N,~S");
-Clazz.defineMethod (c$, "equals",
-function (sf) {
-if (this.begin != sf.begin || this.end != sf.end || this.score != sf.score) {
-return false;
-}if (!(this.type + this.description + this.featureGroup).equals (sf.type + sf.description + sf.featureGroup)) {
-return false;
-}return true;
-}, "jalview.datamodel.SequenceFeature");
-Clazz.defineMethod (c$, "getBegin",
-function () {
-return this.begin;
-});
-Clazz.defineMethod (c$, "setBegin",
-function (start) {
-this.begin = start;
-}, "~N");
-Clazz.defineMethod (c$, "getEnd",
-function () {
-return this.end;
-});
-Clazz.defineMethod (c$, "setEnd",
-function (end) {
-this.end = end;
-}, "~N");
-Clazz.defineMethod (c$, "getType",
-function () {
-return this.type;
-});
-Clazz.defineMethod (c$, "setType",
-function (type) {
-this.type = type;
-}, "~S");
-Clazz.defineMethod (c$, "getDescription",
-function () {
-return this.description;
-});
-Clazz.defineMethod (c$, "setDescription",
-function (desc) {
-this.description = desc;
-}, "~S");
-Clazz.defineMethod (c$, "getFeatureGroup",
-function () {
-return this.featureGroup;
-});
-Clazz.defineMethod (c$, "setFeatureGroup",
-function (featureGroup) {
-this.featureGroup = featureGroup;
-}, "~S");
-Clazz.defineMethod (c$, "addLink",
-function (labelLink) {
-if (this.links == null) {
-this.links = new java.util.Vector ();
-}this.links.insertElementAt (labelLink, 0);
-}, "~S");
-Clazz.defineMethod (c$, "getScore",
-function () {
-return this.score;
-});
-Clazz.defineMethod (c$, "setScore",
-function (value) {
-this.score = value;
-}, "~N");
-Clazz.defineMethod (c$, "getValue",
-function (key) {
-if (this.otherDetails == null) {
-return null;
-} else {
-return this.otherDetails.get (key);
-}}, "~S");
-Clazz.defineMethod (c$, "setValue",
-function (key, value) {
-if (value != null) {
-if (this.otherDetails == null) {
-this.otherDetails = new java.util.Hashtable ();
-}this.otherDetails.put (key, value);
-}}, "~S,~O");
-Clazz.defineMethod (c$, "setStatus",
-function (status) {
-this.setValue ("status", status);
-}, "~S");
-Clazz.defineMethod (c$, "getStatus",
-function () {
-if (this.otherDetails != null) {
-var stat = this.otherDetails.get ("status");
-if (stat != null) {
-return String.instantialize (stat);
-}}return null;
-});
-Clazz.defineMethod (c$, "setPosition",
-function (pos) {
-this.begin = pos;
-this.end = pos;
-}, "~N");
-Clazz.defineMethod (c$, "getPosition",
-function () {
-return this.begin;
-});
-Clazz.defineMethod (c$, "getStrand",
-function () {
-var str;
-if (this.otherDetails == null || (str = this.otherDetails.get ("STRAND").toString ()) == null) {
-return 0;
-}if (str.equals ("-")) {
-return -1;
-}if (str.equals ("+")) {
-return 1;
-}return 0;
-});
-});
+Clazz.declarePackage ("jalview.datamodel");\r
+Clazz.load (null, "jalview.datamodel.SequenceFeature", ["java.util.Hashtable", "$.Vector"], function () {\r
+c$ = Clazz.decorateAsClass (function () {\r
+this.begin = 0;\r
+this.end = 0;\r
+this.score = 0;\r
+this.type = null;\r
+this.description = null;\r
+this.otherDetails = null;\r
+this.links = null;\r
+this.featureGroup = null;\r
+Clazz.instantialize (this, arguments);\r
+}, jalview.datamodel, "SequenceFeature");\r
+Clazz.makeConstructor (c$, \r
+function () {\r
+});\r
+Clazz.makeConstructor (c$, \r
+function (cpy) {\r
+if (cpy != null) {\r
+this.begin = cpy.begin;\r
+this.end = cpy.end;\r
+this.score = cpy.score;\r
+if (cpy.type != null) {\r
+this.type = String.instantialize (cpy.type);\r
+}if (cpy.description != null) {\r
+this.description = String.instantialize (cpy.description);\r
+}if (cpy.featureGroup != null) {\r
+this.featureGroup = String.instantialize (cpy.featureGroup);\r
+}if (cpy.otherDetails != null) {\r
+try {\r
+this.otherDetails = cpy.otherDetails.clone ();\r
+} catch (e) {\r
+if (Clazz.exceptionOf (e, Exception)) {\r
+} else {\r
+throw e;\r
+}\r
+}\r
+}if (cpy.links != null && cpy.links.size () > 0) {\r
+this.links = new java.util.Vector ();\r
+for (var i = 0, iSize = cpy.links.size (); i < iSize; i++) {\r
+this.links.addElement (cpy.links.elementAt (i));\r
+}\r
+}}}, "jalview.datamodel.SequenceFeature");\r
+Clazz.makeConstructor (c$, \r
+function (type, desc, status, begin, end, featureGroup) {\r
+this.type = type;\r
+this.description = desc;\r
+this.setValue ("status", status);\r
+this.begin = begin;\r
+this.end = end;\r
+this.featureGroup = featureGroup;\r
+}, "~S,~S,~S,~N,~N,~S");\r
+Clazz.makeConstructor (c$, \r
+function (type, desc, begin, end, score, featureGroup) {\r
+this.type = type;\r
+this.description = desc;\r
+this.begin = begin;\r
+this.end = end;\r
+this.score = score;\r
+this.featureGroup = featureGroup;\r
+}, "~S,~S,~N,~N,~N,~S");\r
+Clazz.defineMethod (c$, "equals", \r
+function (sf) {\r
+if (this.begin != sf.begin || this.end != sf.end || this.score != sf.score) {\r
+return false;\r
+}if (!(this.type + this.description + this.featureGroup).equals (sf.type + sf.description + sf.featureGroup)) {\r
+return false;\r
+}return true;\r
+}, "jalview.datamodel.SequenceFeature");\r
+Clazz.defineMethod (c$, "getBegin", \r
+function () {\r
+return this.begin;\r
+});\r
+Clazz.defineMethod (c$, "setBegin", \r
+function (start) {\r
+this.begin = start;\r
+}, "~N");\r
+Clazz.defineMethod (c$, "getEnd", \r
+function () {\r
+return this.end;\r
+});\r
+Clazz.defineMethod (c$, "setEnd", \r
+function (end) {\r
+this.end = end;\r
+}, "~N");\r
+Clazz.defineMethod (c$, "getType", \r
+function () {\r
+return this.type;\r
+});\r
+Clazz.defineMethod (c$, "setType", \r
+function (type) {\r
+this.type = type;\r
+}, "~S");\r
+Clazz.defineMethod (c$, "getDescription", \r
+function () {\r
+return this.description;\r
+});\r
+Clazz.defineMethod (c$, "setDescription", \r
+function (desc) {\r
+this.description = desc;\r
+}, "~S");\r
+Clazz.defineMethod (c$, "getFeatureGroup", \r
+function () {\r
+return this.featureGroup;\r
+});\r
+Clazz.defineMethod (c$, "setFeatureGroup", \r
+function (featureGroup) {\r
+this.featureGroup = featureGroup;\r
+}, "~S");\r
+Clazz.defineMethod (c$, "addLink", \r
+function (labelLink) {\r
+if (this.links == null) {\r
+this.links = new java.util.Vector ();\r
+}this.links.insertElementAt (labelLink, 0);\r
+}, "~S");\r
+Clazz.defineMethod (c$, "getScore", \r
+function () {\r
+return this.score;\r
+});\r
+Clazz.defineMethod (c$, "setScore", \r
+function (value) {\r
+this.score = value;\r
+}, "~N");\r
+Clazz.defineMethod (c$, "getValue", \r
+function (key) {\r
+if (this.otherDetails == null) {\r
+return null;\r
+} else {\r
+return this.otherDetails.get (key);\r
+}}, "~S");\r
+Clazz.defineMethod (c$, "setValue", \r
+function (key, value) {\r
+if (value != null) {\r
+if (this.otherDetails == null) {\r
+this.otherDetails = new java.util.Hashtable ();\r
+}this.otherDetails.put (key, value);\r
+}}, "~S,~O");\r
+Clazz.defineMethod (c$, "setStatus", \r
+function (status) {\r
+this.setValue ("status", status);\r
+}, "~S");\r
+Clazz.defineMethod (c$, "getStatus", \r
+function () {\r
+if (this.otherDetails != null) {\r
+var stat = this.otherDetails.get ("status");\r
+if (stat != null) {\r
+return String.instantialize (stat);\r
+}}return null;\r
+});\r
+Clazz.defineMethod (c$, "setPosition", \r
+function (pos) {\r
+this.begin = pos;\r
+this.end = pos;\r
+}, "~N");\r
+Clazz.defineMethod (c$, "getPosition", \r
+function () {\r
+return this.begin;\r
+});\r
+Clazz.defineMethod (c$, "getStrand", \r
+function () {\r
+var str;\r
+if (this.otherDetails == null || (str = this.otherDetails.get ("STRAND").toString ()) == null) {\r
+return 0;\r
+}if (str.equals ("-")) {\r
+return -1;\r
+}if (str.equals ("+")) {\r
+return 1;\r
+}return 0;\r
+});\r
+});\r
git://source.jalview.org / jalviewjs.git / blobdiff