JAL-1807 still testing

[jalviewjs.git] / bin / jalview / jsdev / GenericFileAdapter.js

diff --git a/bin/jalview/jsdev/GenericFileAdapter.js b/bin/jalview/jsdev/GenericFileAdapter.js
index 9144c4b..60cf065 100644 (file)
--- a/bin/jalview/jsdev/GenericFileAdapter.js
+++ b/bin/jalview/jsdev/GenericFileAdapter.js
@@ -1,85 +1,85 @@
-Clazz.declarePackage ("jalview.jsdev");
-Clazz.load (["jalview.io.AlignFile"], "jalview.jsdev.GenericFileAdapter", ["jalview.datamodel.AlignmentI", "jalview.io.FileParse", "java.io.BufferedReader", "$.InputStreamReader", "java.net.URL"], function () {
-c$ = Clazz.declareType (jalview.jsdev, "GenericFileAdapter", jalview.io.AlignFile);
-c$.getFile = Clazz.defineMethod (c$, "getFile", 
-function (fileType, params) {
-var cl = null;
-try {
-cl = Class.forName ("jalview.io." + fileType);
-} catch (e) {
-if (Clazz.exceptionOf (e, ClassNotFoundException)) {
-System.err.println ("did not find file jalview.io." + fileType);
-return null;
-} else {
-throw e;
-}
-}
-var m;
-var ex = null;
-try {
-switch (params.length) {
-case 0:
-return cl.newInstance ();
-case 1:
-m = (Clazz.instanceOf (params[0], jalview.io.FileParse) ? cl.getConstructor ([jalview.io.FileParse]) : cl.getConstructor ([jalview.datamodel.AlignmentI]));
-break;
-case 2:
-m = cl.getConstructor ([String, String]);
-break;
-default:
-return null;
-}
-return m.newInstance (params);
-} catch (e$$) {
-if (Clazz.exceptionOf (e$$, InstantiationException)) {
-var e = e$$;
-{
-ex = e;
-}
-} else if (Clazz.exceptionOf (e$$, IllegalAccessException)) {
-var e = e$$;
-{
-ex = e;
-}
-} else if (Clazz.exceptionOf (e$$, NoSuchMethodException)) {
-var e = e$$;
-{
-ex = e;
-}
-} else if (Clazz.exceptionOf (e$$, SecurityException)) {
-var e = e$$;
-{
-ex = e;
-}
-} else if (Clazz.exceptionOf (e$$, IllegalArgumentException)) {
-var e = e$$;
-{
-ex = e;
-}
-} else if (Clazz.exceptionOf (e$$, java.lang.reflect.InvocationTargetException)) {
-var e = e$$;
-{
-ex = e;
-}
-} else {
-throw e$$;
-}
-}
-if (ex != null) {
-System.err.println ("Error in GenericFileAdapter: " + ex);
-{
-alert(ex)
-}}return null;
-}, "~S,~A");
-c$.isJS = Clazz.defineMethod (c$, "isJS", 
-function () {
-{
-return true;
-}});
-c$.getReader = Clazz.defineMethod (c$, "getReader", 
-function (fileName, forceURL) {
-if (!forceURL && !jalview.jsdev.GenericFileAdapter.isJS ()) return  new java.io.BufferedReader ( new java.io.FileReader (fileName));
-if (fileName.indexOf ("//") < 0) fileName = "file://" + fileName;
-return  new java.io.BufferedReader ( new java.io.InputStreamReader ( new java.net.URL (fileName).openStream ()));
-}, "~S,~B");
-});
+Clazz.declarePackage ("jalview.jsdev");\r
+Clazz.load (["jalview.io.AlignFile"], "jalview.jsdev.GenericFileAdapter", ["jalview.datamodel.AlignmentI", "jalview.io.FileParse", "java.io.BufferedReader", "$.InputStreamReader", "java.net.URL"], function () {\r
+c$ = Clazz.declareType (jalview.jsdev, "GenericFileAdapter", jalview.io.AlignFile);\r
+c$.getFile = Clazz.defineMethod (c$, "getFile", \r
+function (fileType, params) {\r
+var cl = null;\r
+try {\r
+cl = Class.forName ("jalview.io." + fileType);\r
+} catch (e) {\r
+if (Clazz.exceptionOf (e, ClassNotFoundException)) {\r
+System.err.println ("did not find file jalview.io." + fileType);\r
+return null;\r
+} else {\r
+throw e;\r
+}\r
+}\r
+var m;\r
+var ex = null;\r
+try {\r
+switch (params.length) {\r
+case 0:\r
+return cl.newInstance ();\r
+case 1:\r
+m = (Clazz.instanceOf (params[0], jalview.io.FileParse) ? cl.getConstructor ([jalview.io.FileParse]) : cl.getConstructor ([jalview.datamodel.AlignmentI]));\r
+break;\r
+case 2:\r
+m = cl.getConstructor ([String, String]);\r
+break;\r
+default:\r
+return null;\r
+}\r
+return m.newInstance (params);\r
+} catch (e$$) {\r
+if (Clazz.exceptionOf (e$$, InstantiationException)) {\r
+var e = e$$;\r
+{\r
+ex = e;\r
+}\r
+} else if (Clazz.exceptionOf (e$$, IllegalAccessException)) {\r
+var e = e$$;\r
+{\r
+ex = e;\r
+}\r
+} else if (Clazz.exceptionOf (e$$, NoSuchMethodException)) {\r
+var e = e$$;\r
+{\r
+ex = e;\r
+}\r
+} else if (Clazz.exceptionOf (e$$, SecurityException)) {\r
+var e = e$$;\r
+{\r
+ex = e;\r
+}\r
+} else if (Clazz.exceptionOf (e$$, IllegalArgumentException)) {\r
+var e = e$$;\r
+{\r
+ex = e;\r
+}\r
+} else if (Clazz.exceptionOf (e$$, java.lang.reflect.InvocationTargetException)) {\r
+var e = e$$;\r
+{\r
+ex = e;\r
+}\r
+} else {\r
+throw e$$;\r
+}\r
+}\r
+if (ex != null) {\r
+System.err.println ("Error in GenericFileAdapter: " + ex);\r
+{\r
+alert(ex)\r
+}}return null;\r
+}, "~S,~A");\r
+c$.isJS = Clazz.defineMethod (c$, "isJS", \r
+function () {\r
+{\r
+return true;\r
+}});\r
+c$.getReader = Clazz.defineMethod (c$, "getReader", \r
+function (fileName, forceURL) {\r
+if (!forceURL && !jalview.jsdev.GenericFileAdapter.isJS ()) return  new java.io.BufferedReader ( new java.io.FileReader (fileName));\r
+if (fileName.indexOf ("//") < 0) fileName = "file://" + fileName;\r
+return  new java.io.BufferedReader ( new java.io.InputStreamReader ( new java.net.URL (fileName).openStream ()));\r
+}, "~S,~B");\r
+});\r