-Clazz.declarePackage ("jalview.schemes");
-Clazz.load (null, "jalview.schemes.GraduatedColor", ["jalview.schemes.UserColourScheme", "java.awt.Color", "java.lang.Float"], function () {
-c$ = Clazz.decorateAsClass (function () {
-this.thresholdState = -1;
-this.lr = 0;
-this.lg = 0;
-this.lb = 0;
-this.dr = 0;
-this.dg = 0;
-this.db = 0;
-this.base = 0;
-this.range = 0;
-this.thrsh = 0;
-this.tolow = false;
-this.autoScale = true;
-this.ucs = null;
-this.colourByLabel = false;
-Clazz.instantialize (this, arguments);
-}, jalview.schemes, "GraduatedColor");
-Clazz.makeConstructor (c$,
-function (low, high, min, max) {
-this.thrsh = NaN;
-this.tolow = min >= max;
-this.lr = low.getRed () / 255;
-this.lg = low.getGreen () / 255;
-this.lb = low.getBlue () / 255;
-this.dr = (high.getRed () / 255) - this.lr;
-this.dg = (high.getGreen () / 255) - this.lg;
-this.db = (high.getBlue () / 255) - this.lb;
-if (this.tolow) {
-this.base = max;
-this.range = min - max;
-} else {
-this.base = min;
-this.range = max - min;
-}}, "java.awt.Color,java.awt.Color,~N,~N");
-Clazz.makeConstructor (c$,
-function (oldcs) {
-this.lr = oldcs.lr;
-this.lg = oldcs.lg;
-this.lb = oldcs.lb;
-this.dr = oldcs.dr;
-this.dg = oldcs.dg;
-this.db = oldcs.db;
-this.base = oldcs.base;
-this.range = oldcs.range;
-this.tolow = oldcs.tolow;
-this.thresholdState = oldcs.thresholdState;
-this.thrsh = oldcs.thrsh;
-this.autoScale = oldcs.autoScale;
-this.colourByLabel = oldcs.colourByLabel;
-}, "jalview.schemes.GraduatedColor");
-Clazz.makeConstructor (c$,
-function (oldcs, min, max) {
-this.construct (oldcs);
-this.updateBounds (min, max);
-}, "jalview.schemes.GraduatedColor,~N,~N");
-Clazz.defineMethod (c$, "getMinColor",
-function () {
-return new java.awt.Color (this.lr, this.lg, this.lb);
-});
-Clazz.defineMethod (c$, "getMaxColor",
-function () {
-return new java.awt.Color (this.lr + this.dr, this.lg + this.dg, this.lb + this.db);
-});
-Clazz.defineMethod (c$, "getTolow",
-function () {
-return this.tolow;
-});
-Clazz.defineMethod (c$, "setTolow",
-function (tolower) {
-this.tolow = tolower;
-}, "~B");
-Clazz.defineMethod (c$, "isColored",
-function (feature) {
-var val = feature.getScore ();
-if (Float.isNaN (val)) {
-return true;
-}if (this.thresholdState == -1) {
-return true;
-}if (Float.isNaN (this.thrsh)) {
-return true;
-}var rtn = this.thresholdState == 1;
-if (val <= this.thrsh) {
-return !rtn;
-} else {
-return rtn;
-}}, "jalview.datamodel.SequenceFeature");
-Clazz.defineMethod (c$, "isColourByLabel",
-function () {
-return this.colourByLabel;
-});
-Clazz.defineMethod (c$, "setColourByLabel",
-function (colourByLabel) {
-this.colourByLabel = colourByLabel;
-}, "~B");
-Clazz.defineMethod (c$, "findColor",
-function (feature) {
-if (this.colourByLabel) {
-if (this.ucs == null) {
-this.ucs = new jalview.schemes.UserColourScheme ();
-}return this.ucs.createColourFromName (feature.getDescription ());
-}if (this.range == 0.0) {
-return this.getMaxColor ();
-}var scr = feature.getScore ();
-if (Float.isNaN (scr)) {
-return this.getMinColor ();
-}var scl = (scr - this.base) / this.range;
-if (this.tolow) {
-scl = -scl;
-}if (scl < 0) {
-scl = 0;
-}if (scl > 1) {
-scl = 1;
-}return new java.awt.Color (this.lr + scl * this.dr, this.lg + scl * this.dg, this.lb + scl * this.db);
-}, "jalview.datamodel.SequenceFeature");
-Clazz.defineMethod (c$, "setThresh",
-function (value) {
-this.thrsh = value;
-}, "~N");
-Clazz.defineMethod (c$, "getThresh",
-function () {
-return this.thrsh;
-});
-Clazz.defineMethod (c$, "setThreshType",
-function (aboveThreshold) {
-this.thresholdState = aboveThreshold;
-}, "~N");
-Clazz.defineMethod (c$, "getThreshType",
-function () {
-return this.thresholdState;
-});
-Clazz.defineMethod (c$, "getMax",
-function () {
-return (this.tolow) ? this.base : (this.base + this.range);
-});
-Clazz.defineMethod (c$, "getMin",
-function () {
-return (this.tolow) ? (this.base + this.range) : this.base;
-});
-Clazz.defineMethod (c$, "isAutoScale",
-function () {
-return this.autoScale;
-});
-Clazz.defineMethod (c$, "setAutoScaled",
-function (autoscale) {
-this.autoScale = autoscale;
-}, "~B");
-Clazz.defineMethod (c$, "updateBounds",
-function (min, max) {
-if (max < min) {
-this.base = max;
-this.range = min - max;
-this.tolow = true;
-} else {
-this.base = min;
-this.range = max - min;
-this.tolow = false;
-}}, "~N,~N");
-});
+Clazz.declarePackage ("jalview.schemes");\r
+Clazz.load (null, "jalview.schemes.GraduatedColor", ["jalview.schemes.UserColourScheme", "java.awt.Color", "java.lang.Float"], function () {\r
+c$ = Clazz.decorateAsClass (function () {\r
+this.thresholdState = -1;\r
+this.lr = 0;\r
+this.lg = 0;\r
+this.lb = 0;\r
+this.dr = 0;\r
+this.dg = 0;\r
+this.db = 0;\r
+this.base = 0;\r
+this.range = 0;\r
+this.thrsh = 0;\r
+this.tolow = false;\r
+this.autoScale = true;\r
+this.ucs = null;\r
+this.colourByLabel = false;\r
+Clazz.instantialize (this, arguments);\r
+}, jalview.schemes, "GraduatedColor");\r
+Clazz.makeConstructor (c$, \r
+function (low, high, min, max) {\r
+this.thrsh = NaN;\r
+this.tolow = min >= max;\r
+this.lr = low.getRed () / 255;\r
+this.lg = low.getGreen () / 255;\r
+this.lb = low.getBlue () / 255;\r
+this.dr = (high.getRed () / 255) - this.lr;\r
+this.dg = (high.getGreen () / 255) - this.lg;\r
+this.db = (high.getBlue () / 255) - this.lb;\r
+if (this.tolow) {\r
+this.base = max;\r
+this.range = min - max;\r
+} else {\r
+this.base = min;\r
+this.range = max - min;\r
+}}, "java.awt.Color,java.awt.Color,~N,~N");\r
+Clazz.makeConstructor (c$, \r
+function (oldcs) {\r
+this.lr = oldcs.lr;\r
+this.lg = oldcs.lg;\r
+this.lb = oldcs.lb;\r
+this.dr = oldcs.dr;\r
+this.dg = oldcs.dg;\r
+this.db = oldcs.db;\r
+this.base = oldcs.base;\r
+this.range = oldcs.range;\r
+this.tolow = oldcs.tolow;\r
+this.thresholdState = oldcs.thresholdState;\r
+this.thrsh = oldcs.thrsh;\r
+this.autoScale = oldcs.autoScale;\r
+this.colourByLabel = oldcs.colourByLabel;\r
+}, "jalview.schemes.GraduatedColor");\r
+Clazz.makeConstructor (c$, \r
+function (oldcs, min, max) {\r
+this.construct (oldcs);\r
+this.updateBounds (min, max);\r
+}, "jalview.schemes.GraduatedColor,~N,~N");\r
+Clazz.defineMethod (c$, "getMinColor", \r
+function () {\r
+return new java.awt.Color (this.lr, this.lg, this.lb);\r
+});\r
+Clazz.defineMethod (c$, "getMaxColor", \r
+function () {\r
+return new java.awt.Color (this.lr + this.dr, this.lg + this.dg, this.lb + this.db);\r
+});\r
+Clazz.defineMethod (c$, "getTolow", \r
+function () {\r
+return this.tolow;\r
+});\r
+Clazz.defineMethod (c$, "setTolow", \r
+function (tolower) {\r
+this.tolow = tolower;\r
+}, "~B");\r
+Clazz.defineMethod (c$, "isColored", \r
+function (feature) {\r
+var val = feature.getScore ();\r
+if (Float.isNaN (val)) {\r
+return true;\r
+}if (this.thresholdState == -1) {\r
+return true;\r
+}if (Float.isNaN (this.thrsh)) {\r
+return true;\r
+}var rtn = this.thresholdState == 1;\r
+if (val <= this.thrsh) {\r
+return !rtn;\r
+} else {\r
+return rtn;\r
+}}, "jalview.datamodel.SequenceFeature");\r
+Clazz.defineMethod (c$, "isColourByLabel", \r
+function () {\r
+return this.colourByLabel;\r
+});\r
+Clazz.defineMethod (c$, "setColourByLabel", \r
+function (colourByLabel) {\r
+this.colourByLabel = colourByLabel;\r
+}, "~B");\r
+Clazz.defineMethod (c$, "findColor", \r
+function (feature) {\r
+if (this.colourByLabel) {\r
+if (this.ucs == null) {\r
+this.ucs = new jalview.schemes.UserColourScheme ();\r
+}return this.ucs.createColourFromName (feature.getDescription ());\r
+}if (this.range == 0.0) {\r
+return this.getMaxColor ();\r
+}var scr = feature.getScore ();\r
+if (Float.isNaN (scr)) {\r
+return this.getMinColor ();\r
+}var scl = (scr - this.base) / this.range;\r
+if (this.tolow) {\r
+scl = -scl;\r
+}if (scl < 0) {\r
+scl = 0;\r
+}if (scl > 1) {\r
+scl = 1;\r
+}return new java.awt.Color (this.lr + scl * this.dr, this.lg + scl * this.dg, this.lb + scl * this.db);\r
+}, "jalview.datamodel.SequenceFeature");\r
+Clazz.defineMethod (c$, "setThresh", \r
+function (value) {\r
+this.thrsh = value;\r
+}, "~N");\r
+Clazz.defineMethod (c$, "getThresh", \r
+function () {\r
+return this.thrsh;\r
+});\r
+Clazz.defineMethod (c$, "setThreshType", \r
+function (aboveThreshold) {\r
+this.thresholdState = aboveThreshold;\r
+}, "~N");\r
+Clazz.defineMethod (c$, "getThreshType", \r
+function () {\r
+return this.thresholdState;\r
+});\r
+Clazz.defineMethod (c$, "getMax", \r
+function () {\r
+return (this.tolow) ? this.base : (this.base + this.range);\r
+});\r
+Clazz.defineMethod (c$, "getMin", \r
+function () {\r
+return (this.tolow) ? (this.base + this.range) : this.base;\r
+});\r
+Clazz.defineMethod (c$, "isAutoScale", \r
+function () {\r
+return this.autoScale;\r
+});\r
+Clazz.defineMethod (c$, "setAutoScaled", \r
+function (autoscale) {\r
+this.autoScale = autoscale;\r
+}, "~B");\r
+Clazz.defineMethod (c$, "updateBounds", \r
+function (min, max) {\r
+if (max < min) {\r
+this.base = max;\r
+this.range = min - max;\r
+this.tolow = true;\r
+} else {\r
+this.base = min;\r
+this.range = max - min;\r
+this.tolow = false;\r
+}}, "~N,~N");\r
+});\r
git://source.jalview.org / jalviewjs.git / blobdiff