JAL-1807 still testing

[jalviewjs.git] / bin / jalview / schemes / NucleotideColourScheme.js

diff --git a/bin/jalview/schemes/NucleotideColourScheme.js b/bin/jalview/schemes/NucleotideColourScheme.js
index abdfb5e..1345bc6 100644 (file)
--- a/bin/jalview/schemes/NucleotideColourScheme.js
+++ b/bin/jalview/schemes/NucleotideColourScheme.js
@@ -1,31 +1,31 @@
-Clazz.declarePackage ("jalview.schemes");
-Clazz.load (["jalview.schemes.ResidueColourScheme"], "jalview.schemes.NucleotideColourScheme", ["jalview.schemes.ResidueProperties", "java.awt.Color"], function () {
-c$ = Clazz.declareType (jalview.schemes, "NucleotideColourScheme", jalview.schemes.ResidueColourScheme);
-Clazz.makeConstructor (c$, 
-function () {
-Clazz.superConstructor (this, jalview.schemes.NucleotideColourScheme, [jalview.schemes.ResidueProperties.nucleotideIndex, jalview.schemes.ResidueProperties.nucleotide, 0]);
-});
-Clazz.defineMethod (c$, "findColour", 
-function (c) {
-return this.colors[jalview.schemes.ResidueProperties.nucleotideIndex[c.charCodeAt (0)]];
-}, "~S");
-Clazz.defineMethod (c$, "findColour", 
-function (c, j, seq) {
-var currentColour;
-if ((this.threshold == 0) || this.aboveThreshold (c, j)) {
-try {
-currentColour = this.colors[jalview.schemes.ResidueProperties.nucleotideIndex[c.charCodeAt (0)]];
-} catch (ex) {
-if (Clazz.exceptionOf (ex, Exception)) {
-return java.awt.Color.white;
-} else {
-throw ex;
-}
-}
-} else {
-return java.awt.Color.white;
-}if (this.conservationColouring) {
-currentColour = this.applyConservation (currentColour, j);
-}return currentColour;
-}, "~S,~N,jalview.datamodel.SequenceI");
-});
+Clazz.declarePackage ("jalview.schemes");\r
+Clazz.load (["jalview.schemes.ResidueColourScheme"], "jalview.schemes.NucleotideColourScheme", ["jalview.schemes.ResidueProperties", "java.awt.Color"], function () {\r
+c$ = Clazz.declareType (jalview.schemes, "NucleotideColourScheme", jalview.schemes.ResidueColourScheme);\r
+Clazz.makeConstructor (c$, \r
+function () {\r
+Clazz.superConstructor (this, jalview.schemes.NucleotideColourScheme, [jalview.schemes.ResidueProperties.nucleotideIndex, jalview.schemes.ResidueProperties.nucleotide, 0]);\r
+});\r
+Clazz.defineMethod (c$, "findColour", \r
+function (c) {\r
+return this.colors[jalview.schemes.ResidueProperties.nucleotideIndex[c.charCodeAt (0)]];\r
+}, "~S");\r
+Clazz.defineMethod (c$, "findColour", \r
+function (c, j, seq) {\r
+var currentColour;\r
+if ((this.threshold == 0) || this.aboveThreshold (c, j)) {\r
+try {\r
+currentColour = this.colors[jalview.schemes.ResidueProperties.nucleotideIndex[c.charCodeAt (0)]];\r
+} catch (ex) {\r
+if (Clazz.exceptionOf (ex, Exception)) {\r
+return java.awt.Color.white;\r
+} else {\r
+throw ex;\r
+}\r
+}\r
+} else {\r
+return java.awt.Color.white;\r
+}if (this.conservationColouring) {\r
+currentColour = this.applyConservation (currentColour, j);\r
+}return currentColour;\r
+}, "~S,~N,jalview.datamodel.SequenceI");\r
+});\r