import jalview.datamodel.Annotation;
import jalview.datamodel.SequenceCollectionI;
import jalview.datamodel.SequenceI;
-import jalview.jsdev.Constants;
+import jalview.jsdev.GenericFileAdapter;
import java.awt.Color;
import java.util.ArrayList;
: alignment.getContext();
int w = 0;
for (AlignmentAnnotation al : alcontext
- .findAnnotation(Constants.TCOFFEE_SCORE))
+ .findAnnotation(GenericFileAdapter.TCOFFEE_SCORE))
{
if (al.sequenceRef != null && !al.belowAlignment)
{
}
@Override
- public Color findColour(char c, int j, SequenceI seq)
+ public Color findColourSeq(char c, int j, SequenceI seq)
{
Color[] cols;