git://source.jalview.org
/
jalviewjs.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-1807 - Bob's last(?) before leaving Dundee -- adds fast file loading
[jalviewjs.git]
/
src
/
jalview
/
schemes
/
TCoffeeColourScheme.java
diff --git
a/src/jalview/schemes/TCoffeeColourScheme.java
b/src/jalview/schemes/TCoffeeColourScheme.java
index
9e8feea
..
47261f6
100644
(file)
--- a/
src/jalview/schemes/TCoffeeColourScheme.java
+++ b/
src/jalview/schemes/TCoffeeColourScheme.java
@@
-26,7
+26,7
@@
import jalview.datamodel.AnnotatedCollectionI;
import jalview.datamodel.Annotation;
import jalview.datamodel.SequenceCollectionI;
import jalview.datamodel.SequenceI;
import jalview.datamodel.Annotation;
import jalview.datamodel.SequenceCollectionI;
import jalview.datamodel.SequenceI;
-import jalview.jsdev.Constants;
+import jalview.jsdev.GenericFileAdapter;
import java.awt.Color;
import java.util.ArrayList;
import java.awt.Color;
import java.util.ArrayList;
@@
-91,7
+91,7
@@
public class TCoffeeColourScheme extends ResidueColourScheme
: alignment.getContext();
int w = 0;
for (AlignmentAnnotation al : alcontext
: alignment.getContext();
int w = 0;
for (AlignmentAnnotation al : alcontext
- .findAnnotation(Constants.TCOFFEE_SCORE))
+ .findAnnotation(GenericFileAdapter.TCOFFEE_SCORE))
{
if (al.sequenceRef != null && !al.belowAlignment)
{
{
if (al.sequenceRef != null && !al.belowAlignment)
{
@@
-116,7
+116,7
@@
public class TCoffeeColourScheme extends ResidueColourScheme
}
@Override
}
@Override
- public Color findColour(char c, int j, SequenceI seq)
+ public Color findColourSeq(char c, int j, SequenceI seq)
{
Color[] cols;
{
Color[] cols;