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JPRED-2 Add alscript to the Git repository
[jpred.git] / sources / alscript / doc / alscript / tableofcontents3_1.html
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+<HEAD>
+<TITLE>Contents</TITLE>
+</HEAD>
+<BODY><P>
+ <HR> <A NAME=tex2html51 HREF=section3_2.html><IMG ALIGN=MIDDLE SRC="http://geoff.biop.ox.ac.uk/latex2html/next_motif.gif"></A> <A NAME=tex2html49 HREF=alscript.html><IMG ALIGN=MIDDLE SRC="http://geoff.biop.ox.ac.uk/latex2html/up_motif.gif"></A> <A NAME=tex2html43 HREF=alscript.html><IMG ALIGN=MIDDLE SRC="http://geoff.biop.ox.ac.uk/latex2html/previous_motif.gif"></A>  <BR>
+<B> Next:</B> <A NAME=tex2html52 HREF=section3_2.html> Update History</A>
+<B>Up:</B> <A NAME=tex2html50 HREF=alscript.html>No Title</A>
+<B> Previous:</B> <A NAME=tex2html44 HREF=alscript.html>No Title</A>
+<HR> <P>
+<P><H2><A NAME=SECTION0001000000000000000>Contents</A></H2>
+<UL> 
+<LI> <A NAME=tex2html53 HREF=tableofcontents3_1.html#SECTION0001000000000000000>Contents</A>
+<LI> <A NAME=tex2html54 HREF=section3_2.html#SECTION0002000000000000000> Update History</A>
+<LI> <A NAME=tex2html55 HREF=section3_3.html#SECTION0003000000000000000> Read This First - VERSION 2.0</A>
+<LI> <A NAME=tex2html56 HREF=section3_4.html#SECTION0004000000000000000> Related Programs</A>
+<LI> <A NAME=tex2html57 HREF=section3_5.html#SECTION0005000000000000000> Availability</A>
+<LI> <A NAME=tex2html58 HREF=section3_6.html#SECTION0006000000000000000> Installing ALSCRIPT</A>
+<LI> <A NAME=tex2html59 HREF=section3_7.html#SECTION0007000000000000000> Brief Description of ALSCRIPT</A>
+<LI> <A NAME=tex2html60 HREF=section3_8.html#SECTION0008000000000000000> New Features in Version 1.4.4</A>
+<LI> <A NAME=tex2html61 HREF=section3_9.html#SECTION0009000000000000000> New Features in Version 1.4.5 - Program alsnum</A>
+<LI> <A NAME=tex2html62 HREF=section3_10.html#SECTION00010000000000000000> New Features in Version 2.0</A>
+<UL> 
+<LI> <A NAME=tex2html63 HREF=subsection3_10_1.html#SECTION00010100000000000000> New Step 1 Commands</A>
+<LI> <A NAME=tex2html64 HREF=subsection3_10_2.html#SECTION00010200000000000000> New Step 2 Commands</A>
+<LI> <A NAME=tex2html65 HREF=subsection3_10_3.html#SECTION00010300000000000000> New special TEXT commands</A>
+</UL> 
+<LI> <A NAME=tex2html66 HREF=section3_11.html#SECTION00011000000000000000> Running ALSCRIPT</A>
+<UL> 
+<LI> <A NAME=tex2html67 HREF=subsection3_11_1.html#SECTION00011100000000000000> Basic Use</A>
+<LI> <A NAME=tex2html68 HREF=subsection3_11_2.html#SECTION00011200000000000000> More complex effects - Text Lines, and Masks</A>
+</UL> 
+<LI> <A NAME=tex2html69 HREF=section3_12.html#SECTION00012000000000000000> Using Colour</A>
+<LI> <A NAME=tex2html70 HREF=section3_13.html#SECTION00013000000000000000> The MASK command family</A>
+<UL> 
+<LI> <A NAME=tex2html71 HREF=subsection3_13_1.html#SECTION00013100000000000000> Summary of mask commands</A>
+</UL> 
+<LI> <A NAME=tex2html72 HREF=section3_14.html#SECTION00014000000000000000> Printing ALSCRIPT Files</A>
+<LI> <A NAME=tex2html73 HREF=section3_15.html#SECTION00015000000000000000> Conclusion</A>
+<LI> <A NAME=tex2html74 HREF=section3_16.html#SECTION00016000000000000000> Appendices</A>
+<UL> 
+<LI> <A NAME=tex2html75 HREF=subsection3_16_1.html#SECTION00016100000000000000> ALSCRIPT Command Summary</A>
+<UL> 
+<LI> <A NAME=tex2html76 HREF=subsubsection3_16_1_1.html#SECTION00016110000000000000> STEP 1 COMMANDS</A>
+<LI> <A NAME=tex2html77 HREF=subsubsection3_16_1_2.html#SECTION00016120000000000000> REQUIRED STEP 1 COMMANDS</A>
+<LI> <A NAME=tex2html78 HREF=subsubsection3_16_1_3.html#SECTION00016130000000000000> OPTIONAL STEP 1 COMMANDS</A>
+<LI> <A NAME=tex2html79 HREF=subsubsection3_16_1_4.html#SECTION00016140000000000000> STEP 2 COMMANDS</A>
+</UL> 
+<LI> <A NAME=tex2html80 HREF=subsection3_16_2.html#SECTION00016200000000000000> AMPS Block file format</A>
+<LI> <A NAME=tex2html81 HREF=subsection3_16_3.html#SECTION00016300000000000000> PostScript Fonts</A>
+<LI> <A NAME=tex2html82 HREF=subsection3_16_4.html#SECTION00016400000000000000> 386 DOS installation</A>
+<LI> <A NAME=tex2html83 HREF=subsection3_16_5.html#SECTION00016500000000000000> TECHNICAL NOTES</A>
+<LI> <A NAME=tex2html84 HREF=subsection3_16_6.html#SECTION00016600000000000000> Unix Installation</A>
+<LI> <A NAME=tex2html85 HREF=subsection3_16_7.html#SECTION00016700000000000000> VAX/VMS Installation</A>
+<LI> <A NAME=tex2html86 HREF=subsection3_16_8.html#SECTION00016800000000000000> Alternative ways of invoking ALSCRIPT</A>
+<LI> <A NAME=tex2html87 HREF=subsection3_16_9.html#SECTION00016900000000000000> Program Crashes and Known Bugs</A>
+<LI> <A NAME=tex2html88 HREF=subsection3_16_10.html#SECTION000161000000000000000> Wish List for next version!!</A>
+<LI> <A NAME=tex2html89 HREF=subsection3_16_11.html#SECTION000161100000000000000> Acknowledgements</A>
+<LI> <A NAME=tex2html90 HREF=subsection3_16_12.html#SECTION000161200000000000000> References</A>
+</UL> 
+<LI> <A NAME=tex2html91 HREF=section3_17.html#SECTION00017000000000000000>  <em>About this document ...</em> </A>
+</UL>
+<HR>
+
+</BODY>
+<P><ADDRESS>
+gjb@bioch.ox.ac.uk
+</ADDRESS>
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