--- /dev/null
+changed
+void get_seq_scores(double seq_scores[MAX_CLASS_NUMBER], Sequence sequence,
+ double dimer_like[MAXSEQLEN][POSNUM+1],
+ double trimer_like[MAXSEQLEN][POSNUM+1],
+ double bound, double weighted_avg)
+to
+void get_seq_scores(double seq_scores[MAX_CLASS_NUMBER], Sequence sequence,
+ double dimer_like[MAXSEQLEN][POSNUM+1],
+ double trimer_like[MAXSEQLEN][POSNUM+1],
+ double bound)
+
+
+changed
+ if (weighted_avg) weight= dimer_like[i][7] + trimer_like[i][7];
+ else weight = 1;
+to weight= dimer_like[i][7] + trimer_like[i][7];
+
+
+