JPRED-2 Add sources of all binaries (except alscript) to Git

[jpred.git] / sources / multicoil / scconst.h

diff --git a/sources/multicoil/scconst.h b/sources/multicoil/scconst.h
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+/*  Bonnie Berger, David Wilson and Theodore Tonchev 1992  */
+/*      C Header File: modified Ethan Wolf 1995      */
+/*  scconst.h contains constants used throughout the program and for  */
+/*  defining array sizes.                                             */
+#include "options.h"   /* Need this since use ifdef COMPUTE_GAUSSIAN_VERSION */
+
+#ifndef __scconst_h__
+#define __scconst_h__ 1
+
+
+#define Pi 3.1415927
+
+/*  HUGE_VAL should be defined in math.h.  This value here is a different */
+/*  value. */
+
+/*
+#ifndef HUGE_VAL 
+#define HUGE_VAL 32767
+#endif 
+*/
+
+#define DEFOFFSET  3
+/*  Default value for functnum = number of pair distances to use.  */ 
+#define DEFAULT_FUNCTNUM    3
+
+/* Table Calc Constants */
+#define LOG0VAL    -2800
+
+/* Window sizes in scscore.c  determine how big a window to consider. */
+
+#define STOCKWINDOW    28
+#define PAIRWINDOW     30
+#define MINWINDOW 28
+
+extern int WINDOW;
+
+/** For giving 0 frequency events a non-zero estimated prob. **/
+#define DEFAULT_SCALE0 3
+
+extern double SCALE0;
+
+#define AANUM      20
+
+/* #define AnyRes  AANUM */
+#define POSNUM     7
+#define MAXLINE    1040
+#define MAXSEQLEN  8000
+#define MAXFUNCTNUM 7
+#define MAXNUMCOILS 120
+
+/* General Constants */
+
+#ifdef SMALL_MEMORY
+  #define MAX_NUM_SCORE_DIM 6
+#else
+  #define MAX_NUM_SCORE_DIM 14
+#endif
+
+#define NUM_DIM_IN_ORIG_MATRIX 14
+
+#define NUMBER_TABLES 2
+#define MAX_TABLE_NUMBER 2   /* Same as NUMBER_TABLES. **/
+#define MAX_CLASS_NUMBER 3
+#define NUMBER_CLASSES 3
+
+/** This stuff is used when trying to choose optimal init_prob of di/trimers */
+#define GRID_SIZE_DIMER 30
+#define GRID_SIZE_TRIMER 30
+#define DIMER_GRID_STEP .0015 
+#define TRIMER_GRID_STEP .001
+#define MIN_DIMER_PROB 0
+#define MIN_TRIMER_PROB 0
+
+#define MIN(A,B) ((A)<(B)?(A):(B))
+#define MAX(A,B) ((A)>(B)?(A):(B))
+
+/* The residues in the order that the tables use, the order that Stock used. */
+enum { Leucine,
+       Isoleucine,
+       Valine,
+       Methionine,
+       Phenylalanine,
+       Tyrosine,
+       Glycine,
+       Alanine,
+       Lysine,
+       Arginine,
+       Histidine,
+       GlutamicAcid,
+       AsparticAcid,
+       Glutamine,
+       Asparagine,
+       Serine,
+       Threonine,
+       Cysteine,
+       Tryptophan,
+       Proline,
+       AnyRes,
+       Glutamix,
+       Asparagix,
+       Undefined
+     };
+
+#define NUM_RES_TYPE Undefined
+
+#endif   /* __scconst_h__ */
+
+
+/*       End of Code       */
+
+