JPRED-2 Add sources of all binaries (except alscript) to Git

[jpred.git] / sources / multicoil / scio.h

diff --git a/sources/multicoil/scio.h b/sources/multicoil/scio.h
new file mode 100644 (file)
index 0000000..6f210cc
--- /dev/null
+++ b/sources/multicoil/scio.h
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+/*  Bonnie Berger, David Wilson and Theodore Tonchev 1992  */
+/*      C Header File       */
+/*  If __scio_h__ is NOT yet defined, scio.h defines the function   */
+/*  names in scio.c.  These functions are for reading/writing data, */
+/*  inputting sequences, and converting between residue names and   */
+/*  numbers, and between position letters and numbers.              */
+
+
+#ifndef __scio_h__
+#define __scio_h__ 1
+
+#include "scconst.h"
+
+/* Function Prototypes */
+FILE *sopen(char*, char*);
+void sclose(FILE *);
+
+void open_file(FILE **, char*, char*);
+
+void writegenfreq(FILE* fl, 
+                 long totals[], long freqs[AANUM], 
+                 long totalp[POSNUM], long freqp[AANUM][AANUM][POSNUM],
+                 FILE* flog);
+
+void readgenfreq(FILE* fl, 
+                long totals[], long freqs[AANUM], 
+                long totalp[POSNUM], long freqp[AANUM*AANUM*POSNUM],
+                FILE* flog);
+
+void writeposfreq(FILE* fl,
+                 long totals[POSNUM], long freqs[AANUM][POSNUM],
+                 long totalp[POSNUM][POSNUM], 
+                 long freqp[AANUM][AANUM][POSNUM][POSNUM],
+                 FILE* flog);
+
+void readposfreq(FILE* fl,
+                long totals[POSNUM], long freqs[AANUM*POSNUM],
+                long totalp[POSNUM*POSNUM], 
+                long freqp[AANUM*AANUM*POSNUM*POSNUM],
+                FILE* flog);
+
+int getseq(FILE* fl, char seq[MAXSEQLEN], int* offset, int* seqlen, 
+          char *title);
+
+#include "sc.h"
+
+int  getseq2 (FILE* fl, Sequence *sequence);
+
+
+char aanum(char ch);
+char aanum2(char ch);
+char numaa(char ch);
+
+char posnum(char ch);
+
+char numpos(char ch);
+
+#endif   /* __scio_h__ */
+
+/*       End of Code       */
+
+