--- /dev/null
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
+<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
+<title>pairwise: Graph Legend</title>
+<link href="doxygen.css" rel="stylesheet" type="text/css">
+</head><body>
+<!-- Generated by Doxygen 1.3.2 -->
+<div class="qindex"><a class="qindex" href="main.html">Main Page</a> | <a class="qindex" href="classes.html">Alphabetical List</a> | <a class="qindex" href="annotated.html">Data Structures</a> | <a class="qindex" href="files.html">File List</a> | <a class="qindex" href="functions.html">Data Fields</a> | <a class="qindex" href="globals.html">Globals</a></div>
+<h1>Graph Legend</h1>This page explains how to interpret the graphs that are generated by doxygen.<p>
+Consider the following example: <div class="fragment"><pre><span class="comment">/*! Invisible class because of truncation */</span>
+<span class="keyword">class </span>Invisible { };
+<span class="comment"></span>
+<span class="comment">/*! Truncated class, inheritance relation is hidden */</span>
+<span class="keyword">class </span>Truncated : <span class="keyword">public</span> Invisible { };
+
+<span class="comment">/* Class not documented with doxygen comments */</span>
+<span class="keyword">class </span>Undocumented { };
+<span class="comment"></span>
+<span class="comment">/*! Class that is inherited using public inheritance */</span>
+<span class="keyword">class </span>PublicBase : <span class="keyword">public</span> Truncated { };
+<span class="comment"></span>
+<span class="comment">/*! A template class */</span>
+<span class="keyword">template</span><<span class="keyword">class</span> T> <span class="keyword">class </span>Templ { };
+<span class="comment"></span>
+<span class="comment">/*! Class that is inherited using protected inheritance */</span>
+<span class="keyword">class </span>ProtectedBase { };
+<span class="comment"></span>
+<span class="comment">/*! Class that is inherited using private inheritance */</span>
+<span class="keyword">class </span>PrivateBase { };
+<span class="comment"></span>
+<span class="comment">/*! Class that is used by the Inherited class */</span>
+<span class="keyword">class </span>Used { };
+<span class="comment"></span>
+<span class="comment">/*! Super class that inherits a number of other classes */</span>
+<span class="keyword">class </span>Inherited : <span class="keyword">public</span> PublicBase,
+ <span class="keyword">protected</span> ProtectedBase,
+ <span class="keyword">private</span> PrivateBase,
+ <span class="keyword">public</span> Undocumented
+ <span class="keyword">public</span> Templ<int>
+{
+ <span class="keyword">private</span>:
+ Used *m_usedClass;
+};
+</pre></div>If the <code>MAX_DOT_GRAPH_HEIGHT</code> tag in the configuration file is set to 240 this will result in the following graph:<p>
+<center><div align="center">
+<img src="graph_legend.png" alt="graph_legend.png">
+</div>
+</center> <p>
+The boxes in the above graph have the following meaning: <ul>
+<li>
+A filled black box represents the struct or class for which the graph is generated. </li>
+<li>
+A box with a black border denotes a documented struct or class. </li>
+<li>
+A box with a grey border denotes an undocumented struct or class. </li>
+<li>
+A box with a red border denotes a documented struct or class forwhich not all inheritance/containment relations are shown. A graph is truncated if it does not fit within the specified boundaries. </li>
+</ul>
+The arrows have the following meaning: <ul>
+<li>
+A dark blue arrow is used to visualize a public inheritance relation between two classes. </li>
+<li>
+A dark green arrow is used for protected inheritance. </li>
+<li>
+A dark red arrow is used for private inheritance. </li>
+<li>
+A purple dashed arrow is used if a class is contained or used by another class. The arrow is labeled with the variable(s) through which the pointed class or struct is accessible. </li>
+<li>
+A yellow dashed arrow denotes a relation between a template instance and the template class it was instantiated from. The arrow is labeled with the template parameters of the instance. </li>
+</ul>
+<hr size="1"><address style="align: right;"><small>Generated on Thu Jul 24 12:17:52 2003 for pairwise by
+<a href="http://www.doxygen.org/index.html">
+<img src="doxygen.png" alt="doxygen" align="middle" border=0 >
+</a>1.3.2 </small></address>
+</body>
+</html>
git://source.jalview.org / jpred.git / blobdiff