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JPRED-2 Add sources of all binaries (except alscript) to Git
[jpred.git] / sources / pairwise / docs / html / pairwise_8h-source.html
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+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
+<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
+<title>pairwise: pairwise.h Source File</title>
+<link href="doxygen.css" rel="stylesheet" type="text/css">
+</head><body>
+<!-- Generated by Doxygen 1.3.2 -->
+<div class="qindex"><a class="qindex" href="main.html">Main&nbsp;Page</a> | <a class="qindex" href="classes.html">Alphabetical&nbsp;List</a> | <a class="qindex" href="annotated.html">Data&nbsp;Structures</a> | <a class="qindex" href="files.html">File&nbsp;List</a> | <a class="qindex" href="functions.html">Data&nbsp;Fields</a> | <a class="qindex" href="globals.html">Globals</a></div>
+<h1>pairwise.h</h1><a href="pairwise_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre>00001 <span class="preprocessor">#include &lt;stdlib.h&gt;</span>
+00002 
+<a name="l00003"></a><a class="code" href="structfasta.html">00003</a> <span class="keyword">struct </span><a class="code" href="structfasta.html">fasta</a> {
+<a name="l00004"></a><a class="code" href="structfasta.html#o0">00004</a>         <span class="keywordtype">char</span> *<a class="code" href="structfasta.html#o0">id</a>;
+<a name="l00005"></a><a class="code" href="structfasta.html#o1">00005</a>         <span class="keywordtype">char</span> *<a class="code" href="structfasta.html#o1">seq</a>;
+<a name="l00006"></a><a class="code" href="structfasta.html#o2">00006</a>         <span class="keywordtype">int</span> <a class="code" href="structfasta.html#o2">start</a>;
+<a name="l00007"></a><a class="code" href="structfasta.html#o3">00007</a>         <span class="keywordtype">int</span> <a class="code" href="structfasta.html#o3">end</a>;
+<a name="l00008"></a><a class="code" href="structfasta.html#o4">00008</a>         <span class="keywordtype">int</span> <a class="code" href="structfasta.html#o4">numres</a>;
+00009 };
+00010 
+00011 <span class="keywordtype">void</span> <a class="code" href="pairwise_8c.html#a6">fatal_error</a> (<span class="keywordtype">char</span> *message);
+00012 FILE * <a class="code" href="pairwise_8c.html#a8">xfopen</a> (<span class="keyword">const</span> <span class="keywordtype">char</span> *path, <span class="keyword">const</span> <span class="keywordtype">char</span> *mode);
+00013 <span class="keywordtype">void</span> * <a class="code" href="pairwise_8c.html#a9">xmalloc</a> (size_t size);
+00014 <span class="keywordtype">void</span> * <a class="code" href="pairwise_8c.html#a10">xrealloc</a> (<span class="keywordtype">void</span> *ptr, size_t size);
+00015 <span class="keywordtype">int</span> <a class="code" href="pairwise_8c.html#a11">diff</a> (<span class="keywordtype">char</span> a, <span class="keywordtype">char</span> b);
+00016 <span class="keywordtype">float</span> <a class="code" href="pairwise_8c.html#a12">pairwise</a> (<span class="keyword">struct</span> <a class="code" href="structfasta.html">fasta</a> *a, <span class="keyword">struct</span> <a class="code" href="structfasta.html">fasta</a> *b);
+00017 <span class="keywordtype">void</span> <a class="code" href="pairwise_8c.html#a13">populate</a> (<span class="keyword">struct</span> <a class="code" href="structfasta.html">fasta</a> *a);
+00018 <span class="keywordtype">void</span> <a class="code" href="pairwise_8c.html#a14">check_length</a> (<span class="keyword">struct</span> <a class="code" href="structfasta.html">fasta</a> **array);
+00019 <span class="keyword">struct </span><a class="code" href="structfasta.html">fasta</a> ** <a class="code" href="pairwise_8c.html#a15">read_fasta</a> (FILE *fh);
+</pre></div><hr size="1"><address style="align: right;"><small>Generated on Thu Jul 24 12:17:49 2003 for pairwise by
+<a href="http://www.doxygen.org/index.html">
+<img src="doxygen.png" alt="doxygen" align="middle" border=0 > 
+</a>1.3.2 </small></address>
+</body>
+</html>