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[jpred.git] / sources / pairwise / docs / html / structfasta.html
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+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
+<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
+<title>pairwise: fasta struct Reference</title>
+<link href="doxygen.css" rel="stylesheet" type="text/css">
+</head><body>
+<!-- Generated by Doxygen 1.3.2 -->
+<div class="qindex"><a class="qindex" href="main.html">Main&nbsp;Page</a> | <a class="qindex" href="classes.html">Alphabetical&nbsp;List</a> | <a class="qindex" href="annotated.html">Data&nbsp;Structures</a> | <a class="qindex" href="files.html">File&nbsp;List</a> | <a class="qindex" href="functions.html">Data&nbsp;Fields</a> | <a class="qindex" href="globals.html">Globals</a></div>
+<h1>fasta Struct Reference</h1><code>#include &lt;<a class="el" href="pairwise_8h-source.html">pairwise.h</a>&gt;</code>
+<p>
+<table border=0 cellpadding=0 cellspacing=0>
+<tr><td></td></tr>
+<tr><td colspan=2><br><h2>Data Fields</h2></td></tr>
+<tr><td class="memItemLeft" nowrap align=right valign=top>char *&nbsp;</td><td class="memItemRight" valign=bottom><a class="el" href="structfasta.html#o0">id</a></td></tr>
+
+<tr><td class="memItemLeft" nowrap align=right valign=top>char *&nbsp;</td><td class="memItemRight" valign=bottom><a class="el" href="structfasta.html#o1">seq</a></td></tr>
+
+<tr><td class="memItemLeft" nowrap align=right valign=top>int&nbsp;</td><td class="memItemRight" valign=bottom><a class="el" href="structfasta.html#o2">start</a></td></tr>
+
+<tr><td class="memItemLeft" nowrap align=right valign=top>int&nbsp;</td><td class="memItemRight" valign=bottom><a class="el" href="structfasta.html#o3">end</a></td></tr>
+
+<tr><td class="memItemLeft" nowrap align=right valign=top>int&nbsp;</td><td class="memItemRight" valign=bottom><a class="el" href="structfasta.html#o4">numres</a></td></tr>
+
+</table>
+<hr><h2>Field Documentation</h2>
+<a name="o3" doxytag="fasta::end"></a><p>
+<table class="mdTable" width="100%" cellpadding="2" cellspacing="0">
+  <tr>
+    <td class="mdRow">
+      <table cellpadding="0" cellspacing="0" border="0">
+        <tr>
+          <td class="md" nowrap valign="top"> int <a class="el" href="structfasta.html#o3">fasta::end</a>
+      </table>
+    </td>
+  </tr>
+</table>
+<table cellspacing=5 cellpadding=0 border=0>
+  <tr>
+    <td>
+      &nbsp;
+    </td>
+    <td>
+
+<p>
+
+<p>
+Definition at line <a class="el" href="pairwise_8h-source.html#l00007">7</a> of file <a class="el" href="pairwise_8h-source.html">pairwise.h</a>.
+<p>
+Referenced by <a class="el" href="pairwise_8c-source.html#l00106">pairwise()</a>, and <a class="el" href="pairwise_8c-source.html#l00133">populate()</a>.    </td>
+  </tr>
+</table>
+<a name="o0" doxytag="fasta::id"></a><p>
+<table class="mdTable" width="100%" cellpadding="2" cellspacing="0">
+  <tr>
+    <td class="mdRow">
+      <table cellpadding="0" cellspacing="0" border="0">
+        <tr>
+          <td class="md" nowrap valign="top"> char* <a class="el" href="structfasta.html#o0">fasta::id</a>
+      </table>
+    </td>
+  </tr>
+</table>
+<table cellspacing=5 cellpadding=0 border=0>
+  <tr>
+    <td>
+      &nbsp;
+    </td>
+    <td>
+
+<p>
+
+<p>
+Definition at line <a class="el" href="pairwise_8h-source.html#l00004">4</a> of file <a class="el" href="pairwise_8h-source.html">pairwise.h</a>.
+<p>
+Referenced by <a class="el" href="pairwise_8c-source.html#l00179">read_fasta()</a>.    </td>
+  </tr>
+</table>
+<a name="o4" doxytag="fasta::numres"></a><p>
+<table class="mdTable" width="100%" cellpadding="2" cellspacing="0">
+  <tr>
+    <td class="mdRow">
+      <table cellpadding="0" cellspacing="0" border="0">
+        <tr>
+          <td class="md" nowrap valign="top"> int <a class="el" href="structfasta.html#o4">fasta::numres</a>
+      </table>
+    </td>
+  </tr>
+</table>
+<table cellspacing=5 cellpadding=0 border=0>
+  <tr>
+    <td>
+      &nbsp;
+    </td>
+    <td>
+
+<p>
+
+<p>
+Definition at line <a class="el" href="pairwise_8h-source.html#l00008">8</a> of file <a class="el" href="pairwise_8h-source.html">pairwise.h</a>.
+<p>
+Referenced by <a class="el" href="pairwise_8c-source.html#l00106">pairwise()</a>, <a class="el" href="pairwise_8c-source.html#l00133">populate()</a>, and <a class="el" href="pairwise_8c-source.html#l00179">read_fasta()</a>.    </td>
+  </tr>
+</table>
+<a name="o1" doxytag="fasta::seq"></a><p>
+<table class="mdTable" width="100%" cellpadding="2" cellspacing="0">
+  <tr>
+    <td class="mdRow">
+      <table cellpadding="0" cellspacing="0" border="0">
+        <tr>
+          <td class="md" nowrap valign="top"> char* <a class="el" href="structfasta.html#o1">fasta::seq</a>
+      </table>
+    </td>
+  </tr>
+</table>
+<table cellspacing=5 cellpadding=0 border=0>
+  <tr>
+    <td>
+      &nbsp;
+    </td>
+    <td>
+
+<p>
+
+<p>
+Definition at line <a class="el" href="pairwise_8h-source.html#l00005">5</a> of file <a class="el" href="pairwise_8h-source.html">pairwise.h</a>.
+<p>
+Referenced by <a class="el" href="pairwise_8c-source.html#l00106">pairwise()</a>, <a class="el" href="pairwise_8c-source.html#l00133">populate()</a>, and <a class="el" href="pairwise_8c-source.html#l00179">read_fasta()</a>.    </td>
+  </tr>
+</table>
+<a name="o2" doxytag="fasta::start"></a><p>
+<table class="mdTable" width="100%" cellpadding="2" cellspacing="0">
+  <tr>
+    <td class="mdRow">
+      <table cellpadding="0" cellspacing="0" border="0">
+        <tr>
+          <td class="md" nowrap valign="top"> int <a class="el" href="structfasta.html#o2">fasta::start</a>
+      </table>
+    </td>
+  </tr>
+</table>
+<table cellspacing=5 cellpadding=0 border=0>
+  <tr>
+    <td>
+      &nbsp;
+    </td>
+    <td>
+
+<p>
+
+<p>
+Definition at line <a class="el" href="pairwise_8h-source.html#l00006">6</a> of file <a class="el" href="pairwise_8h-source.html">pairwise.h</a>.
+<p>
+Referenced by <a class="el" href="pairwise_8c-source.html#l00106">pairwise()</a>, and <a class="el" href="pairwise_8c-source.html#l00133">populate()</a>.    </td>
+  </tr>
+</table>
+<hr>The documentation for this struct was generated from the following file:<ul>
+<li><a class="el" href="pairwise_8h-source.html">pairwise.h</a></ul>
+<hr size="1"><address style="align: right;"><small>Generated on Thu Jul 24 12:17:51 2003 for pairwise by
+<a href="http://www.doxygen.org/index.html">
+<img src="doxygen.png" alt="doxygen" align="middle" border=0 > 
+</a>1.3.2 </small></address>
+</body>
+</html>