engine/compbio/engine/JpredJob.java

   1 package compbio.engine;
   2
   3 import java.util.ArrayList;
   4 import java.util.List;
   5
   6 import compbio.data.sequence.FastaSequence;
   7
   8 public class JpredJob extends Job {
   9         private String protein;
  10         private String log;
  11         private List<FastaSequence> predictions;
  12         private List<FastaSequence> alignment;
  13
  14         public JpredJob() {
  15                 super();
  16         }
  17
  18         public JpredJob(String jobid, String date1, String date2) {
  19                 super(jobid, date1, date2);
  20                 this.protein = protein;
  21                 predictions = new ArrayList<FastaSequence>();
  22                 alignment  = new ArrayList<FastaSequence>();
  23                 log = "";
  24         }
  25
  26         public JpredJob(String jobid, String date1, String date2, List<FastaSequence> alignment, List<FastaSequence> predictions) {
  27                 super(jobid, date1, date2);
  28                 this.protein = protein;
  29                 this.alignment = alignment;
  30                 this.predictions = predictions;
  31         }
  32
  33         public void setProtein(String protein) {
  34                 this.protein = protein;
  35         }
  36
  37         public String getProtein() {
  38                 return protein;
  39         }
  40
  41         public void setLog(String log) {
  42                 this.log = log;
  43         }
  44
  45         public String getLog() {
  46                 return log;
  47         }
  48
  49         public void setAlignment(List<FastaSequence> al) {
  50                 this.alignment = al;
  51         }
  52
  53         public List<FastaSequence> getAlignment() {
  54                 return alignment;
  55         }
  56
  57         public void setPredictions(List<FastaSequence> pr) {
  58                 this.predictions = pr;
  59         }
  60
  61         public List<FastaSequence> getPredictions() {
  62                 return predictions;
  63         }
  64 }