1 package compbio.controllers;
3 import java.io.IOException;
4 import java.net.HttpURLConnection;
6 import java.util.Calendar;
9 import org.apache.log4j.Logger;
10 import org.springframework.stereotype.Controller;
11 import org.springframework.web.bind.annotation.RequestMapping;
12 import org.springframework.web.bind.annotation.RequestMethod;
13 import org.springframework.web.bind.annotation.RequestParam;
15 import compbio.statistic.CassandraRequester;
16 import compbio.beans.ExecutionTimeBean;
17 import compbio.beans.TotalExecutionTime;
18 import compbio.cassandra.DateFormatter;
19 import compbio.cassandra.readers.CassandraReader;
20 import compbio.cassandra.readers.ExecutionTimeReader;
21 import compbio.cassandra.readers.JobReader;
22 import compbio.engine.archive.ArchivedJob;
25 * @author Alexander Sherstnev
26 * @author Natasha Sherstneva
27 * @version 1.0 Dec 2013
30 public class JobController extends BasicController {
31 private static Logger log = Logger.getLogger(JobController.class);
34 * form a query page for job execution time statistics. The servlet should
35 * be available for users and admins only. By defaults the report time range
36 * is from the earliest day with jobs to today ("Query for all dates" is
37 * ticked). If the user removes the tick the time range is from today - 3
38 * days to today. Currently, the input model is empty.
42 * @return link to the JSP query page
44 @RequestMapping(value = "/stat/exectime/query", method = RequestMethod.GET)
45 public String initFormExecTime(Map<String, Object> model) {
46 model.put("username", getPrincipalName());
47 Calendar cal = Calendar.getInstance();
48 String date2 = cal.get(Calendar.YEAR) + "/" + (cal.get(Calendar.MONTH) + 1) + "/" + cal.get(Calendar.DATE);
49 cal.add(Calendar.DATE, -3);
50 String date1 = cal.get(Calendar.YEAR) + "/" + (cal.get(Calendar.MONTH) + 1) + "/" + cal.get(Calendar.DATE);
52 model.put("date1", date1);
53 model.put("date2", date2);
54 return "query/JobTimeExecution";
58 * form a query page for a job. The servlet should no be visible to users at
63 * @return link to the JSP query page
65 @RequestMapping(value = "/job/query", method = RequestMethod.GET)
66 public String initFindForm(Map<String, Object> model) {
67 model.put("username", getPrincipalName());
68 CassandraRequester cr = new CassandraRequester();
69 model.put("value", cr.getExample("jobid"));
70 return "query/JobLog";
74 * form a report page for a job execution time statistics.
78 * @return link to the JSP query page
80 @RequestMapping(value = "/stat/exectime/results", method = RequestMethod.GET)
81 public String findExecTimeData(@RequestParam("date1") String date1, @RequestParam("date2") String date2,
82 @RequestParam(value = "option", required = false) String option, Map<String, Object> model) {
83 model.put("username", getPrincipalName());
84 final long startTime = System.currentTimeMillis();
85 Calendar loccal = Calendar.getInstance();
86 ExecutionTimeReader reader = new ExecutionTimeReader();
87 if (option.equals("AllDates,off")) {
88 date1 = theEaerlistDate;
89 date2 = theCurrentDate;
92 // dates in string format
93 String trimmeddate1 = date1.replaceAll("\\s", "");
94 String trimmeddate2 = date2.replaceAll("\\s", "");
95 // dates in long format
96 long longDate1 = DateFormatter.DateParsing(date1, formaterYYMMDD);
97 long longDate2 = DateFormatter.DateParsing(date2, formaterYYMMDD);
98 String error = DateChecking(trimmeddate1, trimmeddate2, longDate1, longDate2);
100 model.put("error", error);
101 model.put("date1", date1);
102 model.put("date2", date2);
103 return "query/JobTimeExecution";
106 if (longDate1 < CassandraReader.earliestDate())
107 longDate1 = CassandraReader.earliestDate();
108 if (longDate2 > loccal.getTimeInMillis())
109 longDate2 = loccal.getTimeInMillis();
111 date1 = DateFormatter.DateLongToString(longDate1, formaterYYMMDD);
112 date2 = DateFormatter.DateLongToString(longDate2, formaterYYMMDD);
113 model.put("date1", date1);
114 model.put("date2", date2);
115 model.put("option", option);
116 ExecutionTimeBean res = reader.query(longDate1, longDate2);;
117 model.put("result", res);
118 Map<String, TotalExecutionTime> results = res.getDateTotal();
120 if (0 < res.getDateTotal().size()) {
121 csvline = "\'Date\',\'Total\',\'0-30 sec\',\'30-60 sec\',\'1-2 min\',\'2-10 min\',\'more 10 min\'%0A";
122 for (Map.Entry<String, TotalExecutionTime> entry : results.entrySet()) {
123 csvline += "\'" + entry.getKey() + "\',\'" + entry.getValue().getTotal() + "\',\'" + entry.getValue().getTotal0_30s() + "\',\'"
124 + entry.getValue().getTotal30_60s() + "\',\'" + entry.getValue().getTotal1_2m() + "\',\'"
125 + entry.getValue().getTotal2_10m() + "\',\'" + entry.getValue().getTotal10m() + "\'%0A";
128 model.put("csvfile", csvline);
129 model.put("ndays", res.getDateTotal().size() - 1);
130 final long endTime = System.currentTimeMillis();
131 model.put("timeExecution", (endTime - startTime));
132 return "/reports/TimeExecution";
136 * form a query page for a job. The servlet should no be visible to users at
141 * @return link to the JSP query page
142 * @throws IOException
144 @RequestMapping(value = "/job/results", method = RequestMethod.GET)
145 public String findJob(@RequestParam("IdJob") String jobid, Map<String, Object> model) throws IOException {
146 model.put("username", getPrincipalName());
147 final long startTime = System.currentTimeMillis();
148 JobReader reader = new JobReader();
149 model.put("result", reader.readJobLog(jobid));
150 final long endTime = System.currentTimeMillis();
151 model.put("timeExecution", (endTime - startTime));
152 model.put("IdJob", jobid);
154 ArchivedJob aj = new ArchivedJob(jobid);
156 model.put("jobarchive", aj.prepareJobArchiveToWeb());
157 } catch (IOException e) {
158 log.error("JobController.prepareJobArchiveToWeb: IO exception with job archive file");
159 log.error(e.getLocalizedMessage(), e.getCause());
161 // add a direct link to the job
162 String remotelink = "http://www.compbio.dundee.ac.uk/www-jpred/results/" + jobid + "/" + jobid + ".results.html";
163 URL remotelinkurl = new URL(remotelink);
164 HttpURLConnection httpConnection_remotelinkurl = (HttpURLConnection) remotelinkurl.openConnection();
165 if (199 < httpConnection_remotelinkurl.getResponseCode() && httpConnection_remotelinkurl.getResponseCode() < 300) {
166 model.put("jobremotelink", remotelink);
168 return "reports/Job";