Add mode comments to the classes

[proteocache.git] / build.xml

diff --git a/build.xml b/build.xml
index e913296..1ce818c 100644 (file)
--- a/build.xml
+++ b/build.xml
@@ -1,9 +1,9 @@
 <?xml version="1.0" encoding="UTF-8"?>
 
-<project default="proteocache" name="Build ProteoCache - Caching framework for the Dundee Resource" basedir=".">
+<project default="all" name="Build ProteoCache - Caching framework for the Dundee Resource" basedir=".">
 
        <!-- projects details -->
-       <property name="proteocache_version" value="0.1.0"/>
+       <property name="proteocache_version" value="0.4.99"/>
        <property name="project.url" value="http://www.compbio.dundee.ac.uk/proteocache"/>
        <property name="product" value="ProteoCache"/>
        <property name="author" value="Alexander Sherstnev"/>
@@ -107,7 +107,7 @@
                </jar>
        </target>
 
-       <target name="build-proteocache-jar" depends="compile" description="Pack all compiled codes, configuration, ...">
+       <target name="proteocache-jar" depends="compile" description="Pack all compiled codes, configuration, ...">
                <echo>Build full jar</echo>
                <delete file="${proteocache-jar}"></delete>
                <jar jarfile="${proteocache-jar}">
@@ -126,19 +126,22 @@
                </jar>
        </target>
 
-       <target name="proteocache-server" depends="build-proteocache-jar" description="Prepare ProteoCache war file">
+       <target name="proteocache-server" depends="proteocache-jar" description="Prepare ProteoCache war file">
                <echo>Prepare ProteoCache war file</echo>
                <delete file="${proteocache-war}"></delete>
                <zip destfile="${proteocache-war}" whenempty="create">
                        <zipfileset dir="${basedir}/WEB-INF" prefix="WEB-INF">
                                <exclude name="classes"/>
                                <include name="web.xml"/>
+                               <include name="sun-jaxws.xml"/>
                                <include name="lib/*"/>
                        </zipfileset>
                        <zipfileset dir="." includes="${proteocache-jar}" fullpath="WEB-INF/lib/proteocache.jar"/>
-                       <zipfileset dir="conf" prefix="conf" />
+                       <zipfileset dir="${basedir}/conf" prefix="conf" />
+                       <!-- <zipfileset dir="${basedir}/META-INF" prefix="META-INF" />-->
                        <!-- Add ProteoCache static web site pages apart from the binary archive -->
-                       <zipfileset dir="${basedir}/website" excludes="tests/**, template.html"/>
+                       <zipfileset dir="${basedir}/webapp/resources"/>
+                       <zipfileset dir="${basedir}/webapp/view" prefix="WEB-INF/view"/>
                        <!-- Put a copy of log4j configuration file where it can be used  -->
                        <zipfileset dir="log" includes="log4j.properties" prefix="WEB-INF/classes"/>
                </zip>