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[proteocache.git] / datadb / compbio / beans / ProteinBean.java

diff --git a/datadb/compbio/beans/ProteinBean.java b/datadb/compbio/beans/ProteinBean.java
index b1e2c2f..c649320 100644 (file)
--- a/datadb/compbio/beans/ProteinBean.java
+++ b/datadb/compbio/beans/ProteinBean.java
@@ -7,65 +7,66 @@ import java.util.Map;
 
 import compbio.cassandra.PredictionIndex;
 
-public class ProteinBean implements PredictionIndex{
+public class ProteinBean implements PredictionIndex {
        private String sequence;
        private String jnetpred;
        private List<String> jobid;
-       private LinkedHashMap<String,String> predictions;
-       private List<String> subProt;           // protein sequence divided by several parts for highlighting the particular part
+       private LinkedHashMap<String, String> predictions;
+       private List<String> subProt; // protein sequence divided by several parts
+                                                                       // for highlighting the particular part
        private int size;
-       
-       public ProteinBean (String seq, Map<String,String> pred) {
+
+       public ProteinBean(String seq, Map<String, String> pred) {
                this.sequence = seq;
-               this.predictions = new LinkedHashMap<String,String>();  
+               this.predictions = new LinkedHashMap<String, String>();
                this.jobid = new ArrayList<String>();
                setPredictions(pred);
        }
-       
-       public void setSequence (String seq) {
+
+       public void setSequence(String seq) {
                this.sequence = seq;
        }
-       
-       public void setPredictions(Map<String,String> pred) {
+
+       public void setPredictions(Map<String, String> pred) {
                if (predictions == null)
-                       predictions = new LinkedHashMap<String,String>();       
+                       predictions = new LinkedHashMap<String, String>();
                for (String index : predIndex) {
                        this.predictions.put(index, pred.get(index));
-               }       
+               }
                this.size = predictions.size();
        }
-       
-       public String getSequence () {
+
+       public String getSequence() {
                return sequence;
        }
-       
-       public String getJnetpred () {
+
+       public String getJnetpred() {
                return jnetpred;
        }
-       
-       public void setJnetpred (Map<String,String> pred) {
+
+       public void setJnetpred(Map<String, String> pred) {
                if (pred != null) {
-                       if (pred.containsKey("jnetpred")) 
+                       if (pred.containsKey("jnetpred"))
                                jnetpred = pred.get("jnetpred");
                }
        }
-       
-       public List<String> getJobid () {
+
+       public List<String> getJobid() {
                return jobid;
        }
-       
-       public void setJobid (String id) {
+
+       public void setJobid(String id) {
                this.jobid.add(id);
        }
 
-       public int getSize () {
+       public int getSize() {
                return size;
        }
-       
-       public LinkedHashMap<String,String> getPredictions () {
+
+       public LinkedHashMap<String, String> getPredictions() {
                return predictions;
        }
-       
+
        public void setSubProt(List<String> subProt) {
                this.subProt = subProt;
        }