/*
* delete a record from CF for current jobId
*/
- private void RemoveJob(String jobid, long date) {
+ private void RemoveJob(String jobid, long date) {
+ String status = FindStatus(jobid);
String com0 = "DELETE FROM ProteinLog WHERE JobID = '" + jobid + "';";
System.out.println("Command: " + com0);
session.execute(com0);
- String com1 = "DELETE FROM ProteinRow WHERE JobID = '" + jobid + "';";
- System.out.println("Command: " + com1);
- session.execute(com1);
- String com2 = "DELETE FROM ProteinData WHERE JobID = '" + jobid + "' AND jobtime = " + date + ";";
- System.out.println("Command: " + com2);
- session.execute(com2);
String com3 = "UPDATE jpredarchive SET finalstatus = 'DELETED' WHERE JobID = '" + jobid + "' ;";
System.out.println("Command: " + com3);
session.execute(com3);
- String com = "SELECT total FROM JobDateInfo WHERE jobday = " + date + ";";
+ String com = "SELECT * FROM JobDateInfo WHERE jobday = " + date + ";";
System.out.println("Command: " + com);
ResultSet results = session.execute(com);
- long njobs = results.one().getLong("total");
- System.out.println("njobs: " + njobs);
- String com4 = "INSERT INTO JobDateInfo " + "(jobday, Total)" + " VALUES (" + date + "," + (njobs -1) + ");";
+ Row row = results.one();
+ long njobs = row.getLong("Total") -1 ;
+ if (status.equals("OK")) {
+ long njobsOK = row.getLong("TotalOK") - 1;
+ String com1 = "DELETE FROM ProteinRow WHERE JobID = '" + jobid + "';";
+ System.out.println("Command: " + com1);
+ session.execute(com1);
+ String com2 = "DELETE FROM ProteinData WHERE JobID = '" + jobid + "' AND jobtime = " + date + ";";
+ System.out.println("Command: " + com2);
+ session.execute(com2);
+ UpdateJobDateInfo(date, "TotalOK", njobsOK, njobs);
+ } else {
+ String com6 = "DELETE FROM FailLog WHERE JobID = '" + jobid + "' AND jobtime = " + date + ";";
+ System.out.println("Command: " + com6);
+ session.execute(com6);
+ if (status.equals("STOPPED")) {
+ long njobsStopped = row.getLong("TotalStopped") - 1;
+ UpdateJobDateInfo(date, "TotalStopped", njobsStopped, njobs);
+ } else if (status.equals("ERROR")) {
+ long njobsError = row.getLong("TotalError") - 1;
+ UpdateJobDateInfo(date, "TotalError", njobsError, njobs);
+ } else if (status.equals("TIMEDOUT")) {
+ long njobsTimeOut = row.getLong("TotalTimeOut") - 1;
+ UpdateJobDateInfo(date, "TotalTimeOut", njobsTimeOut, njobs);
+ }
+ }
+ System.out.println("Remove jobs: " + jobid);
+ }
+
+ private void UpdateJobDateInfo(long date, String ColumnName, long totalcol, long total) {
+ String com4 = "UPDATE JobDateInfo SET " + ColumnName + " = " + totalcol + ", Total = " + total + " WHERE jobday = " + date + ";";
System.out.println("Command: " + com4);
session.execute(com4);
- System.out.println("Remove jobs: " + jobid);
}
- public void RemoveJobById (String jobid) {
+ public int RemoveJobById (String jobid) {
if (jobid == null)
- return;
+ return 0;
Long date = FindDate(jobid);
- if (date == null)
- return;
RemoveJob(jobid, date);
+ return 1;
}
- public void RemoveJobByDate (String date1, String date2) {
- System.out.println("Start " + date1 + ", " + date2);
+ public int RemoveJobByDate (String date1, String date2) {
+ int numremover = 0;
if (date1 == null || date2 == null)
- return;
+ return 0;
Long dateBegin = convertDate(date1);
Long dateEnd = convertDate(date2);
- System.out.println("Date to long done!: ");
- if (dateBegin == null || dateEnd == null)
- return;
Calendar start = Calendar.getInstance();
start.setTime(new Date(dateBegin));
Calendar end = Calendar.getInstance();
end.setTime(new Date(dateEnd));
- System.out.println("Date to cal done!: ");
for (Date date = start.getTime(); !start.after(end); start.add(Calendar.DATE, 1), date = start.getTime()) {
+ System.out.println("--------------------------------------------------------------------: ");
String com = "SELECT JobID FROM ProteinData WHERE jobtime = " + date.getTime() + ";";
System.out.println("Command: " + com);
ResultSet results = session.execute(com);
List<Row> rows = results.all();
for (Row r : rows) {
String jobid = r.getString("JobID");
- if (jobid != null)
+ if (jobid != null) {
RemoveJob(jobid, date.getTime());
+ numremover++;
+ }
+ }
+ }
+ String comm = "SELECT JobID FROM FailLog WHERE jobtime = " + date.getTime() + ";";
+ System.out.println("^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^: " + comm);
+ ResultSet resultsfail = session.execute(comm);
+ System.out.println("^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^: " + comm);
+ if (!resultsfail.isExhausted()) {
+ List<Row> rows = resultsfail.all();
+ for (Row r : rows) {
+ String jobid = r.getString("JobID");
+ System.out.println("^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^: " + jobid);
+ if (jobid != null) {
+ RemoveJob(jobid, date.getTime());
+ numremover++;
+ }
}
}
}
+ return numremover;
}
- public void RemoveJobByIp (String ip) {
+ public int RemoveJobByIp (String ip) {
+ int numremover = 0;
if (ip == null)
- return;
+ return 0;
String com = "SELECT databegin, JobID FROM ProteinLog WHERE ip = '" + ip + "';";
- System.out.println("Command: " + com);
ResultSet results = session.execute(com);
if (!results.isExhausted()) {
List<Row> rows = results.all();
if (date == null || jobid == null)
continue;
RemoveJob(jobid, date);
+ numremover++;
}
}
+ return numremover;
}
- public void RemoveJobBySequence (String seq) {
+ public int RemoveJobBySequence (String seq) {
+ int numremover = 0;
if (seq == null)
- return;
+ return 0;
String com = "SELECT JobID FROM ProteinRow WHERE Protein = '" + seq + "';";
- System.out.println("Command: " + com);
ResultSet results = session.execute(com);
if (!results.isExhausted()) {
List<Row> rows = results.all();
for (Row r : rows) {
String jobid = r.getString("JobID");
- if (jobid == null)
- continue;
Long date = FindDate(jobid);
- if (date == null)
- continue;
RemoveJob(jobid, date);
+ numremover++;
}
}
+ return numremover;
}
private Long FindDate(String jobid) {
String com = "SELECT databegin FROM ProteinLog WHERE JobID = '" + jobid + "';";
- System.out.println("Command: " + com);
ResultSet results = session.execute(com);
- if (results.isExhausted())
- return null;
Long date = convertDate(results.one().getString("databegin"));
return date;
}
+ private String FindStatus(String jobid) {
+ String com = "SELECT FinalStatus FROM ProteinLog WHERE JobID = '" + jobid + "';";
+ System.out.println("Command: " + com);
+ ResultSet results = session.execute(com);
+ String status = results.one().getString("FinalStatus");
+ System.out.println("*****status: " + status);
+ return status;
+ }
protected long convertDate (String d) {
try {
git://source.jalview.org / proteocache.git / blobdiff