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Add delay for reading new jobs
[proteocache.git]
/
datadb
/
compbio
/
cassandra
/
JpredParserHTTP.java
diff --git
a/datadb/compbio/cassandra/JpredParserHTTP.java
b/datadb/compbio/cassandra/JpredParserHTTP.java
index
825689e
..
b84ddfd
100644
(file)
--- a/
datadb/compbio/cassandra/JpredParserHTTP.java
+++ b/
datadb/compbio/cassandra/JpredParserHTTP.java
@@
-9,6
+9,8
@@
import java.net.HttpURLConnection;
import java.net.MalformedURLException;
import java.net.URL;
import java.net.URLConnection;
import java.net.MalformedURLException;
import java.net.URL;
import java.net.URLConnection;
+import java.text.ParseException;
+import java.text.SimpleDateFormat;
import java.util.ArrayList;
import java.util.Calendar;
import java.util.Date;
import java.util.ArrayList;
import java.util.Calendar;
import java.util.Date;
@@
-35,6
+37,7
@@
public class JpredParserHTTP implements JpredParser {
private int countNoData;
private static boolean archiving = false;
private static final PropertyHelper ph = ProteoCachePropertyHelperManager.getPropertyHelper();
private int countNoData;
private static boolean archiving = false;
private static final PropertyHelper ph = ProteoCachePropertyHelperManager.getPropertyHelper();
+ static SimpleDateFormat timeformatter = new SimpleDateFormat("yyyy/MM/dd:H:m:s");
public JpredParserHTTP() {
dirprefix = "http://www.compbio.dundee.ac.uk/www-jpred/results";
public JpredParserHTTP() {
dirprefix = "http://www.compbio.dundee.ac.uk/www-jpred/results";
@@
-136,6
+139,14
@@
public class JpredParserHTTP implements JpredParser {
String maindir = dirprefix + "/" + job.getJobID() + "/";
try {
String maindir = dirprefix + "/" + job.getJobID() + "/";
try {
+ Date finishTime = timeformatter.parse(jobinfo[1]);
+ long delay = currDate.getTime() / 1000 - finishTime.getTime() / 1000;
+ if (delay < 120) return 0;
+ } catch (ParseException e) {
+ e.printStackTrace();
+ }
+
+ try {
URL dirurl = new URL(maindir);
HttpURLConnection httpConnection_dirurl = (HttpURLConnection) dirurl.openConnection();
if (httpConnection_dirurl.getResponseCode() < 199 || 300 <= httpConnection_dirurl.getResponseCode()) {
URL dirurl = new URL(maindir);
HttpURLConnection httpConnection_dirurl = (HttpURLConnection) dirurl.openConnection();
if (httpConnection_dirurl.getResponseCode() < 199 || 300 <= httpConnection_dirurl.getResponseCode()) {
@@
-162,6
+173,7
@@
public class JpredParserHTTP implements JpredParser {
job.setLog(parseLogFile(logurl.openStream(), job));
} else {
// The job has not been started at all...
job.setLog(parseLogFile(logurl.openStream(), job));
} else {
// The job has not been started at all...
+ System.out.println ("WARNING! Job " + job.getJobID() + " has status FAIL/STOPPED");
job.setExecutionStatus("FAIL");
job.setFinalStatus("STOPPED");
running = false;
job.setExecutionStatus("FAIL");
job.setFinalStatus("STOPPED");
running = false;