Merge branch 'master' into PROT-9-webservice

[proteocache.git] / datadb / compbio / cassandra / ProteinBean.java

diff --git a/datadb/compbio/cassandra/ProteinBean.java b/datadb/compbio/cassandra/ProteinBean.java
deleted file mode 100644 (file)
index 80f111b..0000000
--- a/datadb/compbio/cassandra/ProteinBean.java
+++ /dev/null
@@ -1,59 +0,0 @@
-package compbio.cassandra;
-
-import java.util.ArrayList;
-import java.util.LinkedHashMap;
-import java.util.List;
-import java.util.Map;
-
-public class ProteinBean implements PredictionIndex{
-       private String sequence;
-       private List<String> jobid;
-       private LinkedHashMap<String,String> predictions;
-       private List<String> subProt;           // protein sequence divided by several parts for highlighting the particular part
-       private int size;
-       
-       public ProteinBean (String seq, Map<String,String> pred) {
-               this.sequence = seq;
-               this.predictions = new LinkedHashMap<String,String>();  
-               this.jobid = new ArrayList<String>();
-               setPredictions(pred);
-       }
-       
-       public void setPredictions(Map<String,String> pred) {
-               if (predictions == null)
-                       predictions = new LinkedHashMap<String,String>();       
-               for (String index : predIndex) {
-                       this.predictions.put(index, pred.get(index));
-               }       
-               this.size = predictions.size();
-       }
-       
-       public String getSequence () {
-               return sequence;
-       }
-       
-       public List<String> getJobid () {
-               return jobid;
-       }
-       
-       public void setJobid (String id) {
-               this.jobid.add(id);
-       }
-
-       public int getSize () {
-               return size;
-       }
-       
-       public LinkedHashMap<String,String> getPredictions () {
-               return predictions;
-       }
-       
-       public void setSubProt(List<String> subProt) {
-               this.subProt = subProt;
-       }
-
-       public List<String> getSubProt() {
-               return subProt;
-       }
-
-}