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[proteocache.git] / engine / compbio / engine / ProteoCachePropertyHelperManager.java

diff --git a/engine/compbio/engine/ProteoCachePropertyHelperManager.java b/engine/compbio/engine/ProteoCachePropertyHelperManager.java
index 4615297..f5f67bb 100644 (file)
--- a/engine/compbio/engine/ProteoCachePropertyHelperManager.java
+++ b/engine/compbio/engine/ProteoCachePropertyHelperManager.java
@@ -34,26 +34,22 @@ public final class ProteoCachePropertyHelperManager {
        private static PropertyHelper ph = null;\r
 \r
        /**\r
-        * Ways to fix path problem: \r
-        * 1) find a path to WEB-INF directory based on the path to a known class. \r
-        * Then prepend this absolute path to the rest of paths \r
-        * pros: no input from user \r
-        * cons: relocation of the source may cause problems \r
+        * Ways to fix path problem: 1) find a path to WEB-INF directory based on\r
+        * the path to a known class. Then prepend this absolute path to the rest of\r
+        * paths pros: no input from user cons: relocation of the source may cause\r
+        * problems\r
         * \r
-        * 2) Require users to add configuration directories to the class\r
-        * path and then load entries from it. \r
-        * pros: \r
-        * cons: Many paths needs to be added. Put significant burden on the user. \r
-        * Hard to tell web appl server to add these entries to its class path. \r
+        * 2) Require users to add configuration directories to the class path and\r
+        * then load entries from it. pros: cons: Many paths needs to be added. Put\r
+        * significant burden on the user. Hard to tell web appl server to add these\r
+        * entries to its class path.\r
         * \r
-        * 3) Ask for project source directory explicitly in the configuration. \r
-        * pros:\r
-        * cons: similar to 1, but this initial configuration file must reside in \r
-        * well known location! Why ask users what can be found automatically?\r
+        * 3) Ask for project source directory explicitly in the configuration.\r
+        * pros: cons: similar to 1, but this initial configuration file must reside\r
+        * in well known location! Why ask users what can be found automatically?\r
         * \r
-        * 4) Have everything in the location already in class path for tomcat. \r
-        * pros:\r
-        * cons: only classes and lib/*.jar are added, Eclipse will remove non \r
+        * 4) Have everything in the location already in class path for tomcat.\r
+        * pros: cons: only classes and lib/*.jar are added, Eclipse will remove non\r
         * classses from classes dir.\r
         * \r
         * Try 1 - succeed.\r
@@ -84,11 +80,8 @@ public final class ProteoCachePropertyHelperManager {
 \r
        /**\r
         * Method return the absolute path to the project root directory. It assumes\r
-        * the following structure of the project:\r
-        * project-root: \r
-        * conf/settings\r
-        * binaries \r
-        * WEB-INF/classes/compbio/engine/conf/PropertyHelperManager.class\r
+        * the following structure of the project: project-root: conf/settings\r
+        * binaries WEB-INF/classes/compbio/engine/conf/PropertyHelperManager.class\r
         * If the structure changes it must be reflected in this method\r
         * \r
         * @return the local path\r
@@ -112,8 +105,8 @@ public final class ProteoCachePropertyHelperManager {
                } catch (IllegalArgumentException e) {\r
                        // Classes are in the jar file, using different method to determine\r
                        // the path new File(INCORRECT URL) throws it\r
-                       String mes = "It looks like classes are in the jar file. " \r
-                                  + "Attempting a different method to determinine the path to the resources";\r
+                       String mes = "It looks like classes are in the jar file. "\r
+                                       + "Attempting a different method to determinine the path to the resources";\r
                        log.debug(mes + e.getLocalizedMessage(), e.getCause());\r
                        try {\r
                                f = new File(ProteoCachePropertyHelperManager.class.getProtectionDomain().getCodeSource().getLocation().toURI().getPath());\r
@@ -147,4 +140,5 @@ public final class ProteoCachePropertyHelperManager {
                        return Boolean.parseBoolean(propValue);\r
                }\r
                return false;\r
-       }}\r
+       }\r
+}\r