Fix logging system and add jabaws libs into the system

[proteocache.git] / log / log4j.properties

diff --git a/log/log4j.properties b/log/log4j.properties
index cd2a406..d186883 100644 (file)
--- a/log/log4j.properties
+++ b/log/log4j.properties
@@ -1,9 +1,4 @@
-\r
-## CHANGE THIS (The root directory where to store all the log files)  \r
-#logDir = .\r
-\r
-## Uncomment to enable JWS2 activity logging to standard out (to the console if available)\r
-## for possible log levels please refer to Log4j documentation http://logging.apache.org/log4j/1.2/manual.html \r
+## Uncomment to enable ProteoCache activity logging\r
 ## Valid log levels are:\r
 ## TRACE - log everything from below including very detailed messages (useful for debugging only)\r
 ## DEBUG - log everything from below including some minor events (useful for debugging only)\r
@@ -25,6 +20,7 @@ org.apache.catalina.core.ContainerBase.[Catalina].[localhost].level = FINE
 #log4j.appender.rootfile.layout.ConversionPattern=%t %d %m%n\r
 \r
 ## Uncomment to enable JWS2 activity logging to the file\r
+#logDir = .\r
 #log4j.logger.compbio=TRACE, ACTIVITY\r
 #log4j.appender.ACTIVITY=org.apache.log4j.RollingFileAppender\r
 ################log4j.appender.ACTIVITY.File=${logDir}/activity.log\r
@@ -42,8 +38,6 @@ org.apache.catalina.core.ContainerBase.[Catalina].[localhost].level = FINE
 #log4j.appender.C.layout.ConversionPattern=%m%n\r
 \r
 ##################################################################################################################################\r
-# log4j.properties from runner/\r
-\r
 #log4j.appender.stdout=org.apache.log4j.ConsoleAppender\r
 #log4j.appender.stdout.Target=System.out\r
 #log4j.appender.stdout.layout=org.apache.log4j.PatternLayout\r
@@ -52,14 +46,14 @@ org.apache.catalina.core.ContainerBase.[Catalina].[localhost].level = FINE
 \r
 log4j.rootLogger=ERROR, R\r
 log4j.appender.R=org.apache.log4j.FileAppender\r
-log4j.appender.R.File=${catalina.base}/logs/JABAWSErrorFile.log\r
+log4j.appender.R.File=${catalina.base}/logs/errors.log\r
 log4j.appender.R.layout=org.apache.log4j.PatternLayout\r
 log4j.appender.R.layout.ConversionPattern=%m%n %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x - \r
 \r
 # %d{ABSOLUTE} %5p %c{1}:%L -\r
-log4j.logger.compbio=WARN, B\r
+log4j.logger.compbio=DEBIG, B\r
 log4j.appender.B=org.apache.log4j.FileAppender\r
-log4j.appender.B.File=${catalina.base}/logs/engine.log\r
+log4j.appender.B.File=${catalina.base}/logs/debugging.log\r
 log4j.appender.B.layout=org.apache.log4j.PatternLayout\r
 log4j.appender.B.layout.ConversionPattern=%m%n %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x - \r
 \r
@@ -70,8 +64,3 @@ log4j.appender.B.layout.ConversionPattern=%m%n %d{MM-dd@HH:mm:ss} %-5p (%13F:%L)
 #log4j.appender.C.layout=org.apache.log4j.PatternLayout\r
 #log4j.appender.C.layout.ConversionPattern=%m%n\r
 # %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x - \r
-\r
-#log4j.logger.RunnerLogger=ERROR, D\r
-#log4j.appender.D=org.apache.log4j.ConsoleAppender \r
-#log4j.appender.D.layout=org.apache.log4j.PatternLayout\r
-#log4j.appender.D.layout.ConversionPattern=%r [%t] %p %c %x - %m%n\r