package compbio.controllers;
-import java.security.Principal;
+import java.io.IOException;
+import java.net.HttpURLConnection;
+import java.net.URL;
+import java.text.ParseException;
import java.util.Calendar;
-import java.util.List;
+import java.util.Date;
import java.util.Map;
+import org.apache.log4j.Logger;
import org.springframework.stereotype.Controller;
import org.springframework.web.bind.annotation.RequestMapping;
import org.springframework.web.bind.annotation.RequestMethod;
import org.springframework.web.bind.annotation.RequestParam;
import compbio.statistic.CassandraRequester;
-import compbio.cassandra.DataBase;
-import compbio.statistic.StatisticsProt;
+import compbio.beans.DateBean;
+import compbio.beans.ExecutionTimeBean;
+import compbio.beans.TotalExecutionTime;
+import compbio.cassandra.DateFormatter;
+import compbio.cassandra.readers.CassandraReader;
+import compbio.cassandra.readers.ExecutionTimeReader;
+import compbio.cassandra.readers.JobReader;
+import compbio.engine.ExecutionInterval;
+import compbio.engine.archive.ArchivedJob;
/**
+ * Spring controller for supporting job queries. This version works in the
+ * servlet style.
+ *
* @author Alexander Sherstnev
* @author Natasha Sherstneva
+ * @version 1.0
+ * @since Dec 2013
*/
@Controller
public class JobController extends BasicController {
+ private static Logger log = Logger.getLogger(JobController.class);
+ /**
+ * form a query page for job execution time statistics. The servlet should
+ * be available for users and admins only. By defaults the report time range
+ * is from the earliest day with jobs to today ("Query for all dates" is
+ * ticked). If the user removes the tick the time range is from today - 3
+ * days to today. Currently, the input model is empty.
+ *
+ * @param model
+ * MVC model
+ * @return link to the JSP query page
+ */
@RequestMapping(value = "/stat/exectime/query", method = RequestMethod.GET)
public String initFormExecTime(Map<String, Object> model) {
model.put("username", getPrincipalName());
return "query/JobTimeExecution";
}
+ /**
+ * form a query page for a job. The servlet should no be visible to users at
+ * all.
+ *
+ * @param model
+ * MVC model
+ * @return link to the JSP query page
+ */
@RequestMapping(value = "/job/query", method = RequestMethod.GET)
public String initFindForm(Map<String, Object> model) {
model.put("username", getPrincipalName());
- model.put("value", "jp_NzBOJKo");
+ CassandraRequester cr = new CassandraRequester();
+ model.put("value", cr.getExample("jobid"));
return "query/JobLog";
}
+ /**
+ * form a report page for a job execution time statistics.
+ *
+ * @param date1
+ * initial date for requested statistics
+ * @param date2
+ * final date for requested statistics
+ * @param alldates
+ * All available jobs are analyzed if alldates="AllDates,off"
+ * @param model
+ * MVC model
+ * @return link to the JSP query page
+ */
@RequestMapping(value = "/stat/exectime/results", method = RequestMethod.GET)
public String findExecTimeData(@RequestParam("date1") String date1, @RequestParam("date2") String date2,
- @RequestParam(value = "option", required = false) String option, Map<String, Object> model) {
+ @RequestParam(value = "option", required = false) String alldates, Map<String, Object> model) {
model.put("username", getPrincipalName());
final long startTime = System.currentTimeMillis();
+ Calendar loccal = Calendar.getInstance();
+ ExecutionTimeReader reader = new ExecutionTimeReader();
+ if (alldates.equals("AllDates,off")) {
+ date1 = getEarliestDate();
+ date2 = getCurrentDate();
+ }
- CassandraRequester sp = new CassandraRequester();
- if (option.equals("AllDates,off")) {
- Calendar cal = Calendar.getInstance();
- date1 = StatisticsProt.DateFormatYYMMDD(sp.earliestDate());
- date2 = cal.get(Calendar.YEAR) + "/" + (cal.get(Calendar.MONTH) + 1) + "/" + cal.get(Calendar.DAY_OF_MONTH);
+ // dates in string format
+ String trimmeddate1 = date1.replaceAll("\\s", "");
+ String trimmeddate2 = date2.replaceAll("\\s", "");
+ // dates in long format
+ long longDate1 = DateFormatter.DateParsing(date1, formaterYYMMDD);
+ long longDate2 = DateFormatter.DateParsing(date2, formaterYYMMDD);
+ String error = checkDates(trimmeddate1, trimmeddate2, longDate1, longDate2);
+ if (error != null) {
+ model.put("error", error);
+ model.put("date1", date1);
+ model.put("date2", date2);
+ return "query/JobTimeExecution";
}
+
+ if (longDate1 < CassandraReader.earliestDate())
+ longDate1 = CassandraReader.earliestDate();
+ if (longDate2 > loccal.getTimeInMillis())
+ longDate2 = loccal.getTimeInMillis();
+
+ date1 = DateFormatter.DateLongToString(longDate1, formaterYYMMDD);
+ date2 = DateFormatter.DateLongToString(longDate2, formaterYYMMDD);
model.put("date1", date1);
model.put("date2", date2);
- model.put("option", option);
- List<DataBase> res = sp.extractExecutionTime(date1, date2);
+ model.put("option", alldates);
+ ExecutionTimeBean res = reader.query(longDate1, longDate2);
+ ;
model.put("result", res);
- model.put("ndays", res.size() - 1);
+ Map<String, TotalExecutionTime> results = res.getDateTotal();
+ StringBuilder csvline = new StringBuilder("");
+ if (0 < res.getDateTotal().size()) {
+ csvline.append("\'Date\',\'Total\',\'0-30 sec\',\'30-60 sec\',\'1-2 min\',\'2-10 min\',\'more 10 min\'%0A");
+ for (Map.Entry<String, TotalExecutionTime> entry : results.entrySet()) {
+ csvline.append("\'" + entry.getKey() + "\',\'" + entry.getValue().getTotal() + "\',\'" + entry.getValue().getTotal0_30s()
+ + "\',\'" + entry.getValue().getTotal30_60s() + "\',\'" + entry.getValue().getTotal1_2m() + "\',\'"
+ + entry.getValue().getTotal2_10m() + "\',\'" + entry.getValue().getTotal10m() + "\'%0A");
+ }
+ }
+ model.put("csvfile", csvline.toString());
+ model.put("ndays", res.getDateTotal().size() - 1);
final long endTime = System.currentTimeMillis();
model.put("timeExecution", (endTime - startTime));
- return "/reportTimeExecution";
+ return "/reports/TimeExecution";
}
+
+ /**
+ * form a report page for job statistics for one day only.
+ *
+ * @param model
+ * MVC model object
+ * @param date
+ * date for the report
+ * @param status
+ *
+ * @return link to the report JSP page
+ */
+ @RequestMapping(value = "/stat/jobsoneday/executionTime", method = RequestMethod.GET)
+ public String findJobsInOneDay(@RequestParam("date") String date, @RequestParam("interval") String interval, Map<String, Object> model)
+ throws ParseException {
+ model.put("username", getPrincipalName());
+ final long startTime = System.currentTimeMillis();
+
+ String realdate;
+ long thetime = 0;
+ try {
+ thetime = formaterYYMMDD.parse(date).getTime();
+ if (thetime < 0) {
+ realdate = date;
+ } else {
+ realdate = formaterDDMMYY.format(new Date(thetime));
+ }
+ } catch (ParseException e) {
+ realdate = date;
+ thetime = formaterDDMMYY.parse(realdate).getTime();
+ }
+
+ if (null == ExecutionInterval.getExecutionInterval(interval))
+ return "support/Notimplemented";
+ ExecutionTimeReader reader = new ExecutionTimeReader();
+ // IMPORTANT: input should be suppied in the format: DD/MM/YYYY
+ DateBean r = reader.readJobByDay(thetime, realdate, ExecutionInterval.getBoundsInterval(interval));
+ model.put("results", r);
+ if (r != null)
+ model.put("njobs", r.getJobidAndSeq().size());
+ model.put("date", realdate);
+ model.put("status", interval);
+ final long endTime = System.currentTimeMillis();
+ model.put("timeExecution", (endTime - startTime));
+ return "reports/JobStatisticsOneDay";
+ }
+
+ /**
+ * form result page for one job with a given job ID.
+ *
+ * @param jobid
+ * job ID
+ * @param model
+ * MVC model
+ *
+ * @return link to the JSP query page
+ * @throws IOException
+ */
@RequestMapping(value = "/job/results", method = RequestMethod.GET)
- public String findJob(@RequestParam("IdJob") String jobid, Map<String, Object> model) {
+ public String findJob(@RequestParam("IdJob") String jobid, Map<String, Object> model) throws IOException {
model.put("username", getPrincipalName());
final long startTime = System.currentTimeMillis();
- CassandraRequester cr = new CassandraRequester();
- model.put("result", cr.readJobLog(jobid));
+ JobReader reader = new JobReader();
+ model.put("result", reader.readJobLog(jobid));
final long endTime = System.currentTimeMillis();
model.put("timeExecution", (endTime - startTime));
model.put("IdJob", jobid);
- return "reportJobLog";
+
+ // prepare archive file for the job for downloading
+ ArchivedJob aj = new ArchivedJob(jobid);
+ try {
+ model.put("jobarchive", aj.prepareJobArchiveToWeb());
+ } catch (IOException e) {
+ log.error("JobController.prepareJobArchiveToWeb: IO exception with job archive file");
+ log.error(e.getLocalizedMessage(), e.getCause());
+ }
+ // add a direct link to the job
+ String remotelink = "http://www.compbio.dundee.ac.uk/www-jpred/results/" + jobid + "/" + jobid + ".results.html";
+ URL remotelinkurl = new URL(remotelink);
+ HttpURLConnection httpConnection_remotelinkurl = (HttpURLConnection) remotelinkurl.openConnection();
+ if (199 < httpConnection_remotelinkurl.getResponseCode() && httpConnection_remotelinkurl.getResponseCode() < 300) {
+ model.put("jobremotelink", remotelink);
+ }
+ return "reports/Job";
}
-
+
}
git://source.jalview.org / proteocache.git / blobdiff