Remove obsolete raw servlets

diff --git a/server/compbio/listeners/ServletDeleteRecord.java b/server/compbio/listeners/ServletDeleteRecord.java
deleted file mode 100644 (file)
index bd288fb..0000000
--- a/server/compbio/listeners/ServletDeleteRecord.java
+++ /dev/null
@@ -1,55 +0,0 @@
-package compbio.listeners;
-
-import java.io.IOException;
-
-import javax.servlet.RequestDispatcher;
-import javax.servlet.ServletException;
-import javax.servlet.http.HttpServlet;
-import javax.servlet.http.HttpServletRequest;
-import javax.servlet.http.HttpServletResponse;
-
-import compbio.cassandra.CassandraRemover;
-import compbio.statistic.CassandraRequester;
-
-/**
- * Servlet implementation class ServletDeleteRecord
- */
-public class ServletDeleteRecord extends HttpServlet {
-       private static final long serialVersionUID = 1L;
-       
-       /**request
-        * @see HttpServlet#doGet(HttpServletRequest request, HttpServletResponse response)
-        */
-       protected void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-               CassandraRemover cr = new CassandraRemover();
-               int numberRemover = 0;
-               String flagId = request.getParameter("byId");
-               String jobId = request.getParameter("id");
-               String flagDate = request.getParameter("byDate");
-               String date1 = request.getParameter("date1");
-               String date2 = request.getParameter("date2");
-               String flagIp = request.getParameter("byIp");
-               String ip = request.getParameter("ip");
-               String flagSeq = request.getParameter("bySequence");
-               String seq = request.getParameter("seq");
-               if (flagId != null)
-                       numberRemover = cr.RemoveJobById(jobId);
-               if (flagDate != null) 
-                       numberRemover = cr.RemoveJobByDate(date1, date2);
-               if (flagIp != null)
-                       numberRemover = cr.RemoveJobByIp(ip);
-               if (flagSeq != null)
-                       numberRemover = cr.RemoveJobBySequence(seq);
-               request.setAttribute("result", numberRemover);
-               RequestDispatcher rd = request.getRequestDispatcher("/ReportAboutRemove.jsp");
-               rd.forward(request, response);
-       }
-
-       /**
-        * @see HttpServlet#doPost(HttpServletRequest request, HttpServletResponse response)
-        */
-       protected void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-               doGet(request, response);
-       }
-
-}

diff --git a/server/compbio/listeners/ServletIp.java b/server/compbio/listeners/ServletIp.java
deleted file mode 100644 (file)
index e229176..0000000
--- a/server/compbio/listeners/ServletIp.java
+++ /dev/null
@@ -1,44 +0,0 @@
-package compbio.listeners;
-
-import java.io.IOException;
-import java.util.List;
-
-import javax.servlet.RequestDispatcher;
-import javax.servlet.ServletException;
-import javax.servlet.http.HttpServlet;
-import javax.servlet.http.HttpServletRequest;
-import javax.servlet.http.HttpServletResponse;
-
-import compbio.cassandra.DataBase;
-import compbio.statistic.CassandraRequester;
-
-/**
- * Servlet implementation class ServletIp
- */
-public class ServletIp extends HttpServlet {
-       private static final long serialVersionUID = 1L;
-       
-       /**
-        * @see HttpServlet#doGet(HttpServletRequest request, HttpServletResponse response)
-        */
-       protected void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-               final long startTime = System.currentTimeMillis();
-               String ip = request.getParameter("ip");
-               CassandraRequester cr = new CassandraRequester();
-       //      List<DataBase> r = cr.readIp(ip);
-       //      request.setAttribute("results", r);
-               final long endTime = System.currentTimeMillis();
-               request.setAttribute("timeExecution", (endTime - startTime));
-               request.setAttribute("ip", ip);
-               RequestDispatcher rd = request.getRequestDispatcher("/FullReportJobsByIp.jsp");
-               rd.forward(request, response);
-       }
-
-       /**
-        * @see HttpServlet#doPost(HttpServletRequest request, HttpServletResponse response)
-        */
-       protected void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-               doGet(request, response);
-       }
-
-}

diff --git a/server/compbio/listeners/ServletJobsByDate.java b/server/compbio/listeners/ServletJobsByDate.java
deleted file mode 100644 (file)
index fe24750..0000000
--- a/server/compbio/listeners/ServletJobsByDate.java
+++ /dev/null
@@ -1,59 +0,0 @@
-package compbio.listeners;
-
-import java.io.IOException;
-import java.text.SimpleDateFormat;
-import java.util.Calendar;
-import java.util.Date;
-import java.util.List;
-
-import javax.servlet.RequestDispatcher;
-import javax.servlet.ServletException;
-import javax.servlet.annotation.WebServlet;
-import javax.servlet.http.HttpServlet;
-import javax.servlet.http.HttpServletRequest;
-import javax.servlet.http.HttpServletResponse;
-
-import compbio.cassandra.DataBase;
-import compbio.statistic.CassandraRequester;
-
-@WebServlet("/ServletJobsByDate")
-public class ServletJobsByDate extends HttpServlet {
-       private static final long serialVersionUID = 1L;
-
-       /**
-        * @see HttpServlet#doPost(HttpServletRequest request, HttpServletResponse
-        *      response)
-        */
-       protected void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-               final long startTime = System.currentTimeMillis();
-               String date1 = request.getParameter("data1");
-               String date2 = request.getParameter("data2");
-               CassandraRequester cr = new CassandraRequester();
-               if (null != request.getParameter("option")) {
-                       Calendar cal = Calendar.getInstance();
-                       date1 = DateFormatYYMMDD(cr.earliestDate());
-                       date2 = cal.get(Calendar.YEAR) + "/" + (cal.get(Calendar.MONTH) + 1) + "/" + cal.get(Calendar.DAY_OF_MONTH);
-               }
-               request.setAttribute("data1", date1);
-               request.setAttribute("data2", date2);
-//             List<DataBase> res = cr.countJobs(date1, date2);
-//             request.setAttribute("result", res);
-               final long endTime = System.currentTimeMillis();
-               request.setAttribute("timeExecution", (endTime - startTime));
-//             System.out.println ("QueryServlet.doGet: total number of dates = " + res.size());
-               request.setAttribute("flag", request.getParameter("option"));
-               RequestDispatcher rd = request.getRequestDispatcher("/ReportJobsByDate.jsp");
-               rd.forward(request, response);
-       }
-
-       protected void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-               doGet(request, response);
-       }
-
-       private String DateFormatYYMMDD(long indate) {
-               SimpleDateFormat datformat = new SimpleDateFormat("yyyy/MM/dd");
-               String dateString = datformat.format(new Date(indate));
-               return dateString;
-       }
-       
-}

diff --git a/server/compbio/listeners/ServletJobsByDay.java b/server/compbio/listeners/ServletJobsByDay.java
deleted file mode 100644 (file)
index 3d2bf4b..0000000
--- a/server/compbio/listeners/ServletJobsByDay.java
+++ /dev/null
@@ -1,41 +0,0 @@
-package compbio.listeners;
-
-import java.io.IOException;
-
-import javax.servlet.RequestDispatcher;
-import javax.servlet.ServletException;
-import javax.servlet.http.HttpServlet;
-import javax.servlet.http.HttpServletRequest;
-import javax.servlet.http.HttpServletResponse;
-
-import compbio.statistic.CassandraRequester;
-
-/**
- * Servlet implementation class ServletByJobSequence
- */
-public class ServletJobsByDay extends HttpServlet {
-       private static final long serialVersionUID = 1L;
-
-       /**
-        * @see HttpServlet#doGet(HttpServletRequest request, HttpServletResponse
-        *      response)
-        */
-       /*
-        * protected void doGet(HttpServletRequest request, HttpServletResponse
-        * response) throws ServletException, IOException { String date =
-        * request.getParameter("date"); CassandraRequester cr = new
-        * CassandraRequester(); request.setAttribute("result",
-        * cr.readJobByDay(date)); request.setAttribute("date", date);
-        * RequestDispatcher rd =
-        * request.getRequestDispatcher("/ReportJobsByADay.jsp");
-        * rd.forward(request, response); }
-        */
-       /**
-        * @see HttpServlet#doPost(HttpServletRequest request, HttpServletResponse
-        *      response)
-        */
-       protected void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-               doGet(request, response);
-       }
-
-}

diff --git a/server/compbio/listeners/ServletJobsByIp.java b/server/compbio/listeners/ServletJobsByIp.java
deleted file mode 100644 (file)
index bff4a5c..0000000
--- a/server/compbio/listeners/ServletJobsByIp.java
+++ /dev/null
@@ -1,45 +0,0 @@
-package compbio.listeners;
-
-import java.io.IOException;
-import java.util.List;
-
-import javax.servlet.RequestDispatcher;
-import javax.servlet.ServletException;
-import javax.servlet.http.HttpServlet;
-import javax.servlet.http.HttpServletRequest;
-import javax.servlet.http.HttpServletResponse;
-
-import compbio.cassandra.DataBase;
-import compbio.statistic.CassandraRequester;
-
-/**
- * Servlet implementation class ServletJobsByIp
- */
-public class ServletJobsByIp extends HttpServlet {
-       private static final long serialVersionUID = 1L;
-       
-
-       /**
-        * @see HttpServlet#doGet(HttpServletRequest request, HttpServletResponse response)
-        */
-       protected void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-               final long startTime = System.currentTimeMillis();
-               int counter = Integer.parseInt(request.getParameter("counterIp"));
-               CassandraRequester cr = new CassandraRequester();
-       //      List<DataBase> r = cr.readIpByCounter(counter);
-//             request.setAttribute("results", r);
-               final long endTime = System.currentTimeMillis();
-               request.setAttribute("timeExecution", (endTime - startTime));
-               request.setAttribute("counter", counter);
-               RequestDispatcher rd = request.getRequestDispatcher("/ReportJobsByIp.jsp");
-               rd.forward(request, response);
-       }
-
-       /**
-        * @see HttpServlet#doPost(HttpServletRequest request, HttpServletResponse response)
-        */
-       protected void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-               doGet(request, response);
-       }
-
-}

diff --git a/server/compbio/listeners/ServletLogInfo.java b/server/compbio/listeners/ServletLogInfo.java
deleted file mode 100644 (file)
index 87c8f92..0000000
--- a/server/compbio/listeners/ServletLogInfo.java
+++ /dev/null
@@ -1,46 +0,0 @@
-package compbio.listeners;
-
-import java.io.IOException;
-
-import javax.servlet.RequestDispatcher;
-import javax.servlet.ServletException;
-import javax.servlet.annotation.WebServlet;
-import javax.servlet.http.HttpServlet;
-import javax.servlet.http.HttpServletRequest;
-import javax.servlet.http.HttpServletResponse;
-
-import compbio.statistic.CassandraRequester;
-
-
-/**
- * Servlet implementation class LogServlet
- */
-@WebServlet("/ServletLogInfo")
-public class ServletLogInfo extends HttpServlet {
-       private static final long serialVersionUID = 1L;
-       
-    
-
-       /**
-        * @see HttpServlet#doGet(HttpServletRequest request, HttpServletResponse response)
-        */
-       protected void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-               final long startTime = System.currentTimeMillis();
-               String id = request.getParameter("IdJob");
-               CassandraRequester cr = new CassandraRequester();
-               request.setAttribute("result", cr.readJobLog(id));
-               final long endTime = System.currentTimeMillis();
-               request.setAttribute("timeExecution", (endTime - startTime));
-               request.setAttribute("IdJob", id);
-               RequestDispatcher rd = request.getRequestDispatcher("/ReportLogInfo.jsp");
-               rd.forward(request, response);
-       }
-
-       /**
-        * @see HttpServlet#doPost(HttpServletRequest request, HttpServletResponse response)
-        */
-       protected void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-               doGet(request, response);
-       }
-
-}

diff --git a/server/compbio/listeners/ServletSequenceProtein.java b/server/compbio/listeners/ServletSequenceProtein.java
deleted file mode 100644 (file)
index b631bff..0000000
--- a/server/compbio/listeners/ServletSequenceProtein.java
+++ /dev/null
@@ -1,61 +0,0 @@
-package compbio.listeners;
-
-import java.io.IOException;
-import java.util.List;
-
-import javax.servlet.RequestDispatcher;
-import javax.servlet.ServletException;
-import javax.servlet.annotation.WebServlet;
-import javax.servlet.http.HttpServlet;
-import javax.servlet.http.HttpServletRequest;
-import javax.servlet.http.HttpServletResponse;
-
-import compbio.cassandra.DataBase;
-import compbio.statistic.CassandraRequester;
-
-/**
- * Servlet implementation class ProtServlet
- */
-@WebServlet("/ServletSequenceProtein")
-public class ServletSequenceProtein extends HttpServlet {
-       private static final long serialVersionUID = 1L;
-
-       /**
-        * @see HttpServlet#doGet(HttpServletRequest request, HttpServletResponse
-        *      response)
-        */
-       protected void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-               final long startTime = System.currentTimeMillis();
-               String flag = request.getParameter("protein");
-               String prot = request.getParameter("prot");
-               String search = request.getParameter("Search");
-               int counter = Integer.parseInt(request.getParameter("counterJob"));
-               CassandraRequester cr = new CassandraRequester();
-               if (search.equals("Search counter")) {
-       //              List<DataBase> r = cr.readProteinByCounter(counter);
-//                     request.setAttribute("results", r);
-       //              System.out.println ("Search counter: " + r.size() + " proteins found");
-               } else {
-               //      List<DataBase> r = cr.readProteins(prot, flag);
-               //      request.setAttribute("results", r);
-               //      System.out.println ("Search sequence: " + r.size() + " proteins found");
-               }
-               final long endTime = System.currentTimeMillis();
-               request.setAttribute("timeExecution", (endTime - startTime));
-               request.setAttribute("prot", prot);
-               request.setAttribute("flag", flag);
-               request.setAttribute("search", search);
-               request.setAttribute("counter", counter);
-               RequestDispatcher rd = request.getRequestDispatcher("/ReportSequenceProtein.jsp");
-               rd.forward(request, response);
-       }
-
-       /**
-        * @see HttpServlet#doPost(HttpServletRequest request, HttpServletResponse
-        *      response)
-        */
-       protected void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-               doGet(request, response);
-       }
-
-}

diff --git a/server/compbio/listeners/ServletTimeExecution.java b/server/compbio/listeners/ServletTimeExecution.java
deleted file mode 100644 (file)
index 93b3faf..0000000
--- a/server/compbio/listeners/ServletTimeExecution.java
+++ /dev/null
@@ -1,61 +0,0 @@
-package compbio.listeners;
-
-import java.io.IOException;
-import java.text.SimpleDateFormat;
-import java.util.Calendar;
-import java.util.Date;
-
-import javax.servlet.RequestDispatcher;
-import javax.servlet.ServletException;
-import javax.servlet.annotation.WebServlet;
-import javax.servlet.http.HttpServlet;
-import javax.servlet.http.HttpServletRequest;
-import javax.servlet.http.HttpServletResponse;
-
-import compbio.statistic.CassandraRequester;
-
-/**
- * Servlet implementation class LengthServlet
- */
-@WebServlet("/ServletTimeExecution")
-public class ServletTimeExecution extends HttpServlet {
-       private static final long serialVersionUID = 1L;
-
-       /**
-        * @see HttpServlet#doGet(HttpServletRequest request, HttpServletResponse
-        *      response)
-        */
-       protected void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-               final long startTime = System.currentTimeMillis();
-               String date1 = request.getParameter("data1");
-               String date2 = request.getParameter("data2");
-               CassandraRequester sp = new CassandraRequester();
-               if (null != request.getParameter("option")) {
-                       Calendar cal = Calendar.getInstance();
-                       date1 = DateFormatYYMMDD(sp.earliestDate());
-                       date2 = cal.get(Calendar.YEAR) + "/" + (cal.get(Calendar.MONTH) + 1) + "/" + cal.get(Calendar.DAY_OF_MONTH);
-               }
-               request.setAttribute("data1", date1);
-               request.setAttribute("data2", date2);
-               request.setAttribute("result", sp.extractExecutionTime(date1, date2));
-               request.setAttribute("flag", request.getParameter("option"));
-               final long endTime = System.currentTimeMillis();
-               request.setAttribute("timeExecution", (endTime - startTime));
-               RequestDispatcher rd = request.getRequestDispatcher("/ReportTimeExecution.jsp");
-               rd.forward(request, response);
-       }
-
-       /**
-        * @see HttpServlet#doPost(HttpServletRequest request, HttpServletResponse
-        *      response)
-        */
-       protected void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-               doGet(request, response);
-       }
-
-       private String DateFormatYYMMDD(long indate) {
-               SimpleDateFormat datformat = new SimpleDateFormat("yyyy/MM/dd");
-               String dateString = datformat.format(new Date(indate));
-               return dateString;
-       }
-}