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2013-12-19	Sasha Sherstnev	Remove obsolete classes	commit \| commitdiff \| tree
2013-12-19	Sasha Sherstnev	Comment wrong code	commit \| commitdiff \| tree
2013-12-19	Sasha Sherstnev	Add private methods instead of exteranl dependency	commit \| commitdiff \| tree
2013-12-19	Sasha Sherstnev	Add private method instead of an exteran dependence	commit \| commitdiff \| tree
2013-12-19	Sasha Sherstnev	Merge branch 'DAO'	commit \| commitdiff \| tree
2013-12-19	Sasha Sherstnev	Replace logo figures	commit \| commitdiff \| tree
2013-12-18	Sasha Sherstnev	Improve webapp appearance	commit \| commitdiff \| tree
2013-12-18	Sasha Sherstnev	Fix problem with the registration form	commit \| commitdiff \| tree
2013-12-18	Sasha Sherstnev	Some tiny technical changes to controllers	commit \| commitdiff \| tree
2013-12-16	Sasha Sherstnev	Fix problem with default target	commit \| commitdiff \| tree
2013-12-16	Sasha Sherstnev	Fix problem with access permissions and make better...	commit \| commitdiff \| tree
2013-12-10	Sasha Sherstnev	Add LDAP authentication and enabling Spring logging	commit \| commitdiff \| tree
2013-12-10	Sasha Sherstnev	remove sourcepath and add ldap jars	commit \| commitdiff \| tree
2013-12-09	Sasha Sherstnev	1. Move query jsps into a separate directory	commit \| commitdiff \| tree
2013-12-06	Sasha Sherstnev	Rename and merge controllers	commit \| commitdiff \| tree
2013-12-06	Sasha Sherstnev	partly working security: registration form, authorization...	commit \| commitdiff \| tree
2013-12-06	Sasha Sherstnev	Partly working security: registration form, authorisaztion...	commit \| commitdiff \| tree
2013-12-05	Sasha Sherstnev	Add posibility to look at failed jobs	commit \| commitdiff \| tree
2013-12-05	Sasha Sherstnev	Fix problem due to new internal java beans	commit \| commitdiff \| tree
2013-12-05	Sasha Sherstnev	Merge branch 'servlets' of https://source.jalview.org...	commit \| commitdiff \| tree
2013-12-05	Sasha Sherstnev	Add basic security jars to the project	commit \| commitdiff \| tree
2013-12-03	Sasha Sherstnev	Add additional checks of input parameters	commit \| commitdiff \| tree
2013-12-03	Sasha Sherstnev	Merge branch 'servlets'	commit \| commitdiff \| tree
2013-12-02	Sasha Sherstnev	Clean up JSP code	commit \| commitdiff \| tree
2013-12-02	Sasha Sherstnev	Fix problem with different date formats	commit \| commitdiff \| tree
2013-12-02	Sasha Sherstnev	Add additional checks of input parameters from html...	commit \| commitdiff \| tree
2013-12-02	Sasha Sherstnev	Remove system prints	commit \| commitdiff \| tree
2013-12-02	Sasha Sherstnev	New internal supporting JSP	commit \| commitdiff \| tree
2013-12-02	Sasha Sherstnev	Improve UI of the website	commit \| commitdiff \| tree
2013-11-29	Sasha Sherstnev	Improve visibility of the website	commit \| commitdiff \| tree
2013-11-29	Sasha Sherstnev	Bug fixed: wrong class object in the logging	commit \| commitdiff \| tree
2013-11-29	Sasha Sherstnev	Fix problem with the bean	commit \| commitdiff \| tree
2013-11-29	Sasha Sherstnev	Modify ant build process for the new project structure	commit \| commitdiff \| tree
2013-11-29	Sasha Sherstnev	Merge branch 'master' into servlets	commit \| commitdiff \| tree
2013-11-29	Sasha Sherstnev	Improve front-end view of the website	commit \| commitdiff \| tree
2013-11-29	Sasha Sherstnev	Convert servlets into Spring controllers	commit \| commitdiff \| tree
2013-11-29	Sasha Sherstnev	improve configuration of the main Spring servlet	commit \| commitdiff \| tree
2013-11-29	Sasha Sherstnev	New bootstrap added	commit \| commitdiff \| tree
2013-11-29	Sasha Sherstnev	Add servlets for queries with IP	commit \| commitdiff \| tree
2013-11-29	Sasha Sherstnev	Remove old bootstrap	commit \| commitdiff \| tree
2013-11-27	Sasha Sherstnev	First working Spring-based version	commit \| commitdiff \| tree
2013-11-25	Sasha Sherstnev	Make all necessary changes for combining old and new...	commit \| commitdiff \| tree
2013-11-25	Sasha Sherstnev	Merge branch 'servlets'	commit \| commitdiff \| tree
2013-11-25	Sasha Sherstnev	delete renamed class	commit \| commitdiff \| tree
2013-11-25	Sasha Sherstnev	Merge branch 'servlets'	commit \| commitdiff \| tree
2013-11-22	Sasha Sherstnev	Improved style	commit \| commitdiff \| tree
2013-11-22	Sasha Sherstnev	Improve table style	commit \| commitdiff \| tree
2013-11-22	Sasha Sherstnev	Improve presentation of job on the web (servlet ServletSeque...	commit \| commitdiff \| tree
2013-11-22	Sasha Sherstnev	Some tweaks with Reporting JSPs	commit \| commitdiff \| tree
2013-11-22	Sasha Sherstnev	Merge branch 'servlets'	commit \| commitdiff \| tree
2013-11-22	Sasha Sherstnev	Switch off archiving by default	commit \| commitdiff \| tree
2013-11-22	Sasha Sherstnev	First working code for archinving Jpred jobs	commit \| commitdiff \| tree
2013-11-22	Sasha Sherstnev	make internal object private	commit \| commitdiff \| tree
2013-11-22	Sasha Sherstnev	some code for reporting Cassansdra status	commit \| commitdiff \| tree
2013-11-22	Sasha Sherstnev	New ProteoCache configuration	commit \| commitdiff \| tree
2013-11-22	Sasha Sherstnev	Fix problems with Eclipse settings	commit \| commitdiff \| tree
2013-11-21	Sasha Sherstnev	Merge branch 'servlets'	commit \| commitdiff \| tree
2013-11-21	Sasha Sherstnev	Better defaults for the JSP	commit \| commitdiff \| tree
2013-11-21	Sasha Sherstnev	correct wb.xml	commit \| commitdiff \| tree
2013-11-20	Sasha Sherstnev	Merge branch 'servlets'	commit \| commitdiff \| tree
2013-11-20	Sasha Sherstnev	PROT-6 Fix problem with missing proteocache.jar in...	commit \| commitdiff \| tree
2013-11-19	Sasha Sherstnev	PROT-6 A first working, but not tested ant-based build...	commit \| commitdiff \| tree
2013-11-19	Sasha Sherstnev	Remove internal FastaReader/FastaSequence and replace...	commit \| commitdiff \| tree
2013-11-19	Sasha Sherstnev	Replace old textng jar with new one	commit \| commitdiff \| tree
2013-11-13	Sasha Sherstnev	Better proteocache configuration for tests with real...	commit \| commitdiff \| tree
2013-11-13	Sasha Sherstnev	Add still-not-working code for archiving jobs	commit \| commitdiff \| tree
2013-11-12	Sasha Sherstnev	Code for Jpred Job java Bean	commit \| commitdiff \| tree
2013-11-12	Sasha Sherstnev	RIntroduce Bean for Jpred job	commit \| commitdiff \| tree
2013-11-12	Sasha Sherstnev	Change JpredArchive table	commit \| commitdiff \| tree
2013-11-12	Sasha Sherstnev	Re-design the parser for inserting alignment-only and...	commit \| commitdiff \| tree
2013-11-12	Sasha Sherstnev	Fix bug for inserting job without known predictions	commit \| commitdiff \| tree
2013-11-11	Sasha Sherstnev	Switch off fillin new tables by default	commit \| commitdiff \| tree
2013-11-11	Sasha Sherstnev	Fix problem with filling new tables	commit \| commitdiff \| tree
2013-11-11	Sasha Sherstnev	Rebuild tables for queries	commit \| commitdiff \| tree
2013-11-09	Sasha Sherstnev	Merge branch 'servlets'	commit \| commitdiff \| tree
2013-11-09	Sasha Sherstnev	Remive interface	commit \| commitdiff \| tree
2013-11-09	Sasha Sherstnev	Add filling new tables with data from old tables	commit \| commitdiff \| tree
2013-11-09	Sasha Sherstnev	Re-engineering of database I/O	commit \| commitdiff \| tree
2013-11-08	Sasha Sherstnev	Merge branch 'master' into servlets	commit \| commitdiff \| tree
2013-11-08	Sasha Sherstnev	Merge branch 'master' into servlets	commit \| commitdiff \| tree
2013-11-08	Sasha Sherstnev	Update classpath	commit \| commitdiff \| tree
2013-11-08	Sasha Sherstnev	Updated website	commit \| commitdiff \| tree
2013-11-08	Sasha Sherstnev	Updated website	commit \| commitdiff \| tree
2013-11-08	Sasha Sherstnev	Remove keyspace name from queries	commit \| commitdiff \| tree
2013-11-08	Sasha Sherstnev	Fix problems with Natasha's code	commit \| commitdiff \| tree
2013-11-08	Natasha Sherstneva	fix data report, protein report	commit \| commitdiff \| tree
2013-11-08	Sasha Sherstnev	Add lost JRE	commit \| commitdiff \| tree
2013-11-08	Natasha Sherstneva	add class with structure	commit \| commitdiff \| tree
2013-11-08	Natasha Sherstneva	fix data report, protein report	commit \| commitdiff \| tree
2013-11-08	Sasha Sherstnev	Still not-working system for reading cassandra	commit \| commitdiff \| tree
2013-11-08	Sasha Sherstnev	Improved cassandra support	commit \| commitdiff \| tree
2013-11-08	Sasha Sherstnev	Start documentation	commit \| commitdiff \| tree
2013-11-08	Sasha Sherstnev	Add PropertyHelper for running ProteoCache	commit \| commitdiff \| tree
2013-11-08	Sasha Sherstnev	Add properties configuration to the system	commit \| commitdiff \| tree
2013-11-08	Sasha Sherstnev	Fix logging system and add jabaws libs into the system	commit \| commitdiff \| tree
2013-11-05	Sasha Sherstnev	Update basic jars: from Thrift to native banary protocol (2)	commit \| commitdiff \| tree
2013-11-05	Sasha Sherstnev	Update basic jars: from Thrift to native banary protocol	commit \| commitdiff \| tree
2013-11-05	Sasha Sherstnev	Add Jpred archive table	commit \| commitdiff \| tree
2013-11-05	Sasha Sherstnev	Restore one servlet	commit \| commitdiff \| tree
2013-11-05	Sasha Sherstnev	Restore libraries for JSP tags	commit \| commitdiff \| tree
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