3 This file is part of the Vamsas Client version 0.1.
4 Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite,
5 Andrew Waterhouse and Dominik Lindner.
7 Earlier versions have also been incorporated into Jalview version 2.4
8 since 2008, and TOPALi version 2 since 2007.
10 The Vamsas Client is free software: you can redistribute it and/or modify
11 it under the terms of the GNU Lesser General Public License as published by
12 the Free Software Foundation, either version 3 of the License, or
13 (at your option) any later version.
15 The Vamsas Client is distributed in the hope that it will be useful,
16 but WITHOUT ANY WARRANTY; without even the implied warranty of
17 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
18 GNU Lesser General Public License for more details.
20 You should have received a copy of the GNU Lesser General Public License
21 along with the Vamsas Client. If not, see <http://www.gnu.org/licenses/>.
23 <project name="vamsas-client" default="build" basedir=".">
26 <property name="libDir" value="lib"/>
27 <property name="toolsDir" value="tools"/>
28 <property name="resourceDir" value="resources"/>
29 <property name="sourceDir" value="src" />
30 <property name="outputDir" value="classes" />
31 <property name="packageDir" value="packages" />
32 <property name="vamsasClient.jar" value="vamsas-client.jar" />
33 <property name="vamsasClientDoc.jar" value="vamsas-client-docs.jar" />
34 <property name="vamsasClientSource.jar" value="vamsas-client-src-doc.jar" />
35 <property name="vamsasSchemaDocs.jar" value="vamsas-schema-and-doc.jar" />
36 <property name="vamsas.schema" value="schemas/vamsas.xsd" />
37 <property name="vamsas.doc.schema" value="schemas/vamsasDocument.xsd" />
38 <property name="vamsas.schema.package" value="uk.ac.vamsas.objects.core" />
39 <property name="vamsas.schema.package.src" value="uk/ac/vamsas/objects/core" />
40 <property name="vamsas.schema.sourcegen.properties" value="schemas/castorbuilder.properties"/>
41 <path id="castor.classpath">
43 <include name="*.jar"/>
44 <include name="**/*.jar"/>
47 <include name="*.jar"/>
48 <include name="**/*.jar"/>
55 <path id="build.classpath">
56 <fileset dir="${toolsDir}">
57 <include name="*.jar"/>
58 <include name="**/*.jar"/>
61 <fileset dir="${libDir}">
62 <include name="*.jar"/>
63 <include name="**/*.jar"/>
65 <!-- path refid="axis.classpath" -->
68 <target name="cleancoresource" depends="init" description="Clean automatically generated packages">
70 <fileset dir="${sourceDir}/${vamsas.schema.package.src}">
71 <include name="*.java"/>
72 <include name="descriptors/*.java"/>
76 <target name="makecoresource" depends="init, cleancoresource" description="Generate Java source files from XSD.">
77 <taskdef name="castor-srcgen"
78 classname="org.castor.anttask.CastorCodeGenTask"
79 classpathref="castor.classpath" />
80 <!-- Should apply this to every schema file in ${vamsas.schemas} directory -->
81 <castor-srcgen file="${vamsas.schema}"
83 package="${vamsas.schema.package}"
86 properties="${vamsas.schema.sourcegen.properties}"
88 <castor-srcgen file="${vamsas.doc.schema}"
90 package="${vamsas.schema.package}"
93 properties="${vamsas.schema.sourcegen.properties}"
96 <target name="prepare" depends="init">
97 <mkdir dir="${packageDir}"/>
98 <mkdir dir="${outputDir}"/>
99 <copy todir="${outputDir}">
100 <fileset dir="${resourceDir}" />
101 <fileset dir="${basedir}">
102 <include name="LICENS*"/>
103 <include name="COPYING*"/>
104 <include name="CONTRIB"/>
105 <include name="README"/>
109 <target name="clean" depends="init">
111 <fileset dir="${outputDir}">
113 <include name="*.*"/>
114 <include name="**/*"/>
115 <include name="**/*.*"/>
118 <delete dir="${axisbuild}"/>
119 <!-- <ant dir="test" antfile="build.xml" target="clean"
120 inheritRefs="true"/> -->
122 <target name="realclean" depends="init, clean">
123 <delete dir="${packageDir}"/>
125 <target name="distclean" depends="init, realclean">
126 <echo message="REMOVING ALL BACKUP/AUTOSAVES!"/>
129 <include name="#*#"/>
130 <include name="#*.*#"/>
131 <include name="**/#*#"/>
132 <include name="**/#*.*#"/>
134 <include name="*.*~"/>
135 <include name="**/*~"/>
136 <include name="**/*.*~"/>
141 <target name="build" depends="init, prepare">
142 <!-- not efficient yet. : use excludes="*/localtest/*.java" if local tests are not building -->
143 <javac classpathref="build.classpath" debug="on" srcdir="${sourceDir}" destdir="${outputDir}" deprecation="on" source="1.4" target="1.4">
144 <exclude name="uk/ac/ebi/msd/vamsas/**"/>
147 <target name="jar" depends="build, javadoc">
148 <jar destfile="${packageDir}/${vamsasClient.jar}">
149 <fileset dir="${outputDir}">
150 <exclude name="cache*/**"/>
151 <include name="**/*" />
152 <exclude name="*.jar.*" />
153 <exclude name="**/*.jar" />
154 <exclude name="**/*.jar.*" />
155 <exclude name="*.java"/>
156 <exclude name="**/*.java"/>
157 <exclude name="uk/*.class"/>
158 <exclude name="log4j.properties"/>
159 <exclude name="commons-logging.properties"/>
162 <jar destfile="${packageDir}/${vamsasClientDoc.jar}">
163 <fileset dir="docs/api">
164 <include name="**/*"/>
166 <fileset dir="${basedir}">
167 <include name="README"/>
168 <include name="CONTRIB"/>
169 <include name="LICEN*"/>
170 <include name="COPYING*"/>
173 <jar destfile="${packageDir}/${vamsasSchemaDocs.jar}">
174 <fileset dir="${basedir}/schemas">
175 <include name="*.xsd"/>
177 <fileset dir="${basedir}/docs/schema">
178 <include name="**/*"/>
180 <fileset dir="${basedir}">
181 <include name="COPYING*"/>
184 <jar destfile="${packageDir}/${vamsasClientSource.jar}">
185 <fileset dir="${basedir}">
186 <include name="src/**/*.java"/>
187 <include name="src/**/*.cdr"/>
189 <exclude name="**/*.java~"/>
190 <include name="resources/**"/>
191 <include name="utils/**"/>
192 <include name="tools/**"/>
193 <include name="schemas/**"/>
194 <include name="test"/>
195 <include name="docs/**"/>
196 <include name="tools/**"/>
197 <include name="lib/**"/>
198 <include name="README"/>
199 <include name="CONTRIB"/>
200 <include name="LICEN*"/>
201 <include name="COPYING*"/>
202 <include name="*.eclipse*"/>
203 <include name="*.launch"/>
204 <include name="build.xml"/>
209 <target name="javadoc" depends="init">
210 <javadoc destdir="docs/api" classpathref="build.classpath" author="true" version="true" use="true">
211 <fileset dir="${sourceDir}" defaultexcludes="yes">
212 <exclude name="**/.castor.cdr"/>
213 <!-- this was for the old ebi packages.
214 <exclude name="uk/**"/>
215 <exclude name="uk/*.java"/> -->